View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_60 (Length: 251)
Name: NF0589_low_60
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_60 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 28103029 - 28102792
Alignment:
| Q |
13 |
aatattggaggaagacaaccctttttgagattgcttatggtttaggcactcctcttgctattgatgacgctactcttagtagaagatttggggtctttgc |
112 |
Q |
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| T |
28103029 |
aatattggaggaagagaaccctttttgagattgcttatggtttaggcactcctcttgctattgatgac-ctactcttagtagaagatttggggtctttgc |
28102931 |
T |
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| Q |
113 |
aagggtgcttgtagatgttgatctgtctgagcaattatttgagtcagtggttgttgaaactgaagggtacgctctatccattgatatccaatatgagaaa |
212 |
Q |
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| T |
28102930 |
aagggtgcttgtagatgttgatctgtctgagcaattatttgagtcagtggttgttgaaactgaagggtacgctctatccattgatatccaatatgagaaa |
28102831 |
T |
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| Q |
213 |
cagcctcctttttgtgtcaattggaagttctgggacaca |
251 |
Q |
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| T |
28102830 |
cagcctcctttttgtgtcaattggaagttctgggacaca |
28102792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 36904972 - 36905211
Alignment:
| Q |
13 |
aatattggaggaagacaaccctttttgagattgcttatggtttaggcactcctcttgctattgatgacgctactcttagtagaagatttggggtctttgc |
112 |
Q |
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| T |
36904972 |
aatattggaggaagacggccctttttgagattgctttcggtttaggcactcctcttgctattgatgatgctactcttagtagaagatttggggtctttgc |
36905071 |
T |
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| Q |
113 |
aagggtgcttgtagatgttgatctgtctgagcaattatttgagtcagtggttgttgaaactgaagggtacgctctatccattgatatccaatatgagaaa |
212 |
Q |
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| T |
36905072 |
aagggtgcttgtagatgttgatctatctgaacaattatttgagtcagtggttgttgaaattgaagggtacattctatccattgatatccaatatgagaag |
36905171 |
T |
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| Q |
213 |
cagcctcctttttgtgtcaattg-gaagttctgggacaca |
251 |
Q |
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| T |
36905172 |
taacctcctttttgagtcaattgtaaagttctgggacaca |
36905211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 38983229 - 38983295
Alignment:
| Q |
13 |
aatattggaggaagacaaccctttttgagattgcttatggtttaggcactcctcttgctattgatga |
79 |
Q |
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| T |
38983229 |
aatattagaggaagacaaccctgtttgagattgcttcaggcttaggtacccctcttgcaattgatga |
38983295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 51523583 - 51523709
Alignment:
| Q |
102 |
ggggtctttgcaagggtgcttgtagatgttgatctgtctgagcaattatttgagtcagtggttgttgaaactgaagggtacgctctatccattgatatcc |
201 |
Q |
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||||| ||||| ||| | ||||| |||||||| || |||||||| |||||||||| |||||||| ||||| ||||| | ||| ||| |||||| ||| |
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| T |
51523583 |
ggggtttttgccaggattcttgtggatgttgacctttctgagcagttatttgagtatgtggttgtggaaacagaaggccatgctttatttattgatgtcc |
51523682 |
T |
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| Q |
202 |
aatatgagaaacagcctcctttttgtg |
228 |
Q |
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| T |
51523683 |
aatatgagaagcaaccacttttttgtg |
51523709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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