View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0589_low_64 (Length: 232)

Name: NF0589_low_64
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0589_low_64
NF0589_low_64
[»] chr1 (5 HSPs)
chr1 (53-152)||(31026920-31027019)
chr1 (67-152)||(31029787-31029872)
chr1 (67-148)||(31036757-31036838)
chr1 (53-145)||(31041927-31042020)
chr1 (67-135)||(31022879-31022948)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 31026920 - 31027019
Alignment:
Q  53 tgactaactgtaatattcttatggtttgaacttgaaagttgacaattgaacgaatcaaacttcttgtgcaccaaactatacacacgaaaacaagtactag 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31026920 tgactaactgtaatattcttatggtttgaacttgaaagttgacaattgaacgaatcaaacttcttgtgcaccaaactatacacacgaaaacaagtactag 31027019  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 31029787 - 31029872
Alignment:
Q  67 attcttatggtttgaacttgaaagttgacaattgaacgaatcaaacttcttgtgcaccaaactatacacacgaaaacaagtactag 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31029787 attcttatggtttgaacttgaaagttgacaattgaacgaatcaaacttcttgtgcaccaaactatacacacgaaaacaagtactag 31029872  T

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Target: chr1; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 31036757 - 31036838
Alignment:
Q  67 attcttatggtttgaacttgaaagttgacaattgaacgaatcaaacttcttgtgcaccaaactatacacacgaaaacaagta 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31036757 attcttatggtttgaacttgaaagttgacaattgaacgaatcaaacttcttgtgcaccaaactatacacacgaaaacaagta 31036838  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 31041927 - 31042020
Alignment:
Q  53 tgactaactgtaatattcttatggtttgaacttgaaa--gttgacaattgaacgaatcaaacttcttgtgcaccaaactatacacacgaaaacaa 145  Q
    ||||||| |||||| ||||||||||||||||||||||  |||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  31041927 tgactaattgtaat-ttcttatggtttgaacttgaaaaagttgacgattgaacgaatcaaacttcttgtgccccaaattatacacacgaaaacaa 31042020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 31022879 - 31022948
Alignment:
Q  67 attcttatggtttgaacttgaaagttgacaattgaacgaatcaaac-ttcttgtgcaccaaactatacac 135  Q
    |||| ||||| ||||||||||| ||||| | | ||||||||||||| |||||||||||||||||| ||||    
T  31022879 attcgtatgggttgaacttgaaggttgaaagtagaacgaatcaaactttcttgtgcaccaaactaaacac 31022948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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