View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_73 (Length: 207)
Name: NF0589_low_73
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 1088184 - 1088049
Alignment:
| Q |
1 |
tgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaaccactaccatct |
100 |
Q |
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| T |
1088184 |
tgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaaccactaccatct |
1088085 |
T |
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| Q |
101 |
ccagccacatccaagtttgaataagccatgcaagaa |
136 |
Q |
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| T |
1088084 |
ccagccacatccaagtttgaataagccatgcaagaa |
1088049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 1047710 - 1047575
Alignment:
| Q |
1 |
tgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaaccactaccatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
1047710 |
tgtggaagcatccattcgaatatatagatattgttggaatgttaagatctgtttcaagtcaataagatcaccaaaccatatagaacaaccactgccatct |
1047611 |
T |
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| Q |
101 |
ccagccacatccaagtttgaataagccatgcaagaa |
136 |
Q |
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| T |
1047610 |
ccagccacatccaagtttgaataagccatgcaagaa |
1047575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 1072520 - 1072388
Alignment:
| Q |
1 |
tgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaaccactaccatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||| | |||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
1072520 |
tgtggaagcatccattcgaatatatagatattgttggaatgttaaaatctgtcttaagtctataagatcaccaaaccatatggaacatccactaccat-- |
1072423 |
T |
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| Q |
101 |
ccagccacatccaagtttgaataagccatgcaagaa |
136 |
Q |
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| T |
1072422 |
-cactcacatttaagtttgaataagccatacaagaa |
1072388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 1104737 - 1104602
Alignment:
| Q |
1 |
tgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaaccactaccatct |
100 |
Q |
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|||||||||||||||||||| ||| |||| |||||| | |||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
1104737 |
tgtggaagcatccattcgaacataaagatcttgttgaactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaaccactaccatct |
1104638 |
T |
|
| Q |
101 |
ccagccacatccaagtttgaataagccatgcaagaa |
136 |
Q |
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|| ||||| |||||||||||||||||||||||| |
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| T |
1104637 |
cccctaacatctaagtttgaataagccatgcaagaa |
1104602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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