View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0589_low_8 (Length: 510)
Name: NF0589_low_8
Description: NF0589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0589_low_8 |
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| [»] scaffold0002 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 95 - 463
Target Start/End: Original strand, 30208467 - 30208835
Alignment:
| Q |
95 |
aattagtgtccttattacagaccaataaggacccatcttcgatcccctattgattgagaaacagtaacagaaccacaattacatacaatacaacatgtaa |
194 |
Q |
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| T |
30208467 |
aattagtgtccttattacagaccaataaggacccatcttcaatcccctattgattgagaaacagtaacagaaccacaattacatacaatacaacatgtaa |
30208566 |
T |
|
| Q |
195 |
ctcaaaattcaaacatatatctacaacatgaaataaaaattaacaaaaagatcatatgatgttaccatctgttgctgttcaatgcattcagaattctccc |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30208567 |
ctcaaaattcaaacatatatctacaacatgaaataaaaattaacaaaaagatcatatgatgttaccatctgttgctgttcaatgcattcaggattctccc |
30208666 |
T |
|
| Q |
295 |
cctcctgagcagcattgatttcatcagtaacaccaacaccggttgccaccttcttcttcctaccacgtttccccttgatcttcttaacttccagctcctc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30208667 |
cctcctgagcagcattgatttcatcagtaacaccaacaccggttgccaccttcttcttcctaccacgtttccccttaatcttcttaacttccagctcctc |
30208766 |
T |
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| Q |
395 |
ctctacatctgacaagtaatcctcgttcaatgatctgctactcttcttggcacgctcacttcatctcac |
463 |
Q |
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| T |
30208767 |
ctctacatctaacaagtaatcctcgttcaatgatctgctactcttcttggcacgctcacttcttctcac |
30208835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 51454923 - 51454862
Alignment:
| Q |
120 |
taaggacccatcttcgatcccctattgattgagaaacagtaacagaaccacaattacataca |
181 |
Q |
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| T |
51454923 |
taaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacataca |
51454862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 51496401 - 51496349
Alignment:
| Q |
130 |
tcttcgatcccctattgattgagaaacagtaacagaaccacaattacatacaa |
182 |
Q |
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| T |
51496401 |
tcttcgatccactgttgattgagaaacattaacagaatcacaattacatacaa |
51496349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 444
Target Start/End: Original strand, 410994 - 411065
Alignment:
| Q |
373 |
tcttcttaacttccagctcctcctctacatctgacaagtaatcctcgttcaatgatctgctactcttcttgg |
444 |
Q |
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| T |
410994 |
tcttcttcacttccacttcctcctccacatctgacatgtaatcatccttcaatgatctactactcttcttgg |
411065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 422487 - 422545
Alignment:
| Q |
200 |
aattcaaacatatatctacaacatgaaataaaaattaacaaaaagatcatatgatgtta |
258 |
Q |
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| T |
422487 |
aattcaaacatatatctacaaagtgaaattaaaattagcaaaaagatcatgtgatgtta |
422545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 426477 - 426547
Alignment:
| Q |
181 |
aatacaacatgtaactcaaaattcaaacatatatctacaacatgaaataaaaattaacaaaaagatcatat |
251 |
Q |
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||||||||||||||||| || ||||||| |||||||||| |||||| ||||||| |||||| ||||||| |
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| T |
426477 |
aatacaacatgtaactccaagctcaaacacatatctacaaagtgaaattaaaattagcaaaaatatcatat |
426547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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