View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0590_high_11 (Length: 242)
Name: NF0590_high_11
Description: NF0590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0590_high_11 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 14812852 - 14812624
Alignment:
| Q |
14 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812852 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
14812753 |
T |
|
| Q |
114 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812752 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
14812653 |
T |
|
| Q |
214 |
tcttggatgtcaaattaaggaaaggtttc |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14812652 |
tcttggatgtcaaattaaggaaaggtttc |
14812624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 15259847 - 15259619
Alignment:
| Q |
14 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259847 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
15259748 |
T |
|
| Q |
114 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259747 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
15259648 |
T |
|
| Q |
214 |
tcttggatgtcaaattaaggaaaggtttc |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15259647 |
tcttggatgtcaaattaaggaaaggtttc |
15259619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 17521328 - 17521556
Alignment:
| Q |
14 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521328 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
17521427 |
T |
|
| Q |
114 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521428 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
17521527 |
T |
|
| Q |
214 |
tcttggatgtcaaattaaggaaaggtttc |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17521528 |
tcttggatgtcaaattaaggaaaggtttc |
17521556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1005 times since January 2019
Visitors: 3839