View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0590_high_3 (Length: 357)
Name: NF0590_high_3
Description: NF0590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0590_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 30 - 344
Target Start/End: Complemental strand, 32158318 - 32158003
Alignment:
| Q |
30 |
agttattgttgatgaaatatagttaataatgctaatgttattacacaggtggatgcttttactgagttggcgttcaaggggaaccctgcagcagtgtgtt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158318 |
agttattgttgatgaaatatagttaataatgctaatgttattacacaggtggatgcttttactgagttggcgttcaaggggaaccctgcagcagtgtgtt |
32158219 |
T |
|
| Q |
130 |
tgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaacatcaatgttacctgttatttgattcctgtcaagggaaccactaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
32158218 |
tgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaacatcaatgttacctgctatttgattcctgtcaagggaactactaa |
32158119 |
T |
|
| Q |
230 |
tccccgttttcgtcttagatggtttactcccattgttgaggtatagtacaactaattat-cattaccaaaaactctcgcacnnnnnnncttcttcataag |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||| |||||||||||| |
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| T |
32158118 |
tccccgttttcgtcttagatggtttactcccattgttgaggtatagtacaactaattatccagtaccacaaactctcacactttttttcttcttcataag |
32158019 |
T |
|
| Q |
329 |
tagatgagttaggtct |
344 |
Q |
| |
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|||||||||||||||| |
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| T |
32158018 |
tagatgagttaggtct |
32158003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 272
Target Start/End: Complemental strand, 32169148 - 32168978
Alignment:
| Q |
102 |
ttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaacatcaatgttacctgtt |
201 |
Q |
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| T |
32169148 |
ttcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctgctgaattcaacatctctgaaacatgtt |
32169049 |
T |
|
| Q |
202 |
atttgattcctgtcaagggaaccactaatccccgttttcgtcttagatggtttactcccattgttgaggta |
272 |
Q |
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| T |
32169048 |
atttgactcctattcatggaacctctattcctcgttttggtcttagatggtttactcctgttgctgaggta |
32168978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 271
Target Start/End: Complemental strand, 27325273 - 27325104
Alignment:
| Q |
102 |
ttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaacatcaatgttacctgtt |
201 |
Q |
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||||| ||||| || |||||||||||||| ||||| |||| || ||||||||||||||||||| |||||| ||||| ||||| || | || |||| |
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| T |
27325273 |
ttcaaagggaatccagcagcagtgtgtttcttagaagaagataaagatgatgaatggttgcaagcattagctgctgaattcaatgtctctcaaacatgtt |
27325174 |
T |
|
| Q |
202 |
atttgattcctgtcaagggaaccactaatccccgttttcgtcttagatggtttactcccattgttgaggt |
271 |
Q |
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|||||| |||| | | |||||| ||| ||| |||||| |||| |||||||||||||| | ||||||||| |
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| T |
27325173 |
atttgactcctattcatggaacctctattcctcgttttggtctcagatggtttactcctactgttgaggt |
27325104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 102 - 271
Target Start/End: Complemental strand, 27350303 - 27350134
Alignment:
| Q |
102 |
ttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaacatcaatgttacctgtt |
201 |
Q |
| |
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||||| ||||| || |||||||||||||| ||||| |||| || |||||||||||||||||| |||||| ||||| ||||| || | || |||| |
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| T |
27350303 |
ttcaaagggaatccagcagcagtgtgtttcttagaagaagataaagatgatgaatggttgcaatcattagctgctgaattcaatgtctctcaaacatgtt |
27350204 |
T |
|
| Q |
202 |
atttgattcctgtcaagggaaccactaatccccgttttcgtcttagatggtttactcccattgttgaggt |
271 |
Q |
| |
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|||||| |||| | | |||||| ||| ||| |||||| |||| | |||||||||||| ||||||||||| |
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| T |
27350203 |
atttgactcctattcatggaacctctattcctcgttttggtctgaaatggtttactcctattgttgaggt |
27350134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 27358142 - 27358252
Alignment:
| Q |
74 |
acaggtggatgcttttactgagttggcgttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagca |
173 |
Q |
| |
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|||||||||||| || |||||| || ||||| ||||| || |||||||| ||||| ||||| |||| || ||||||||||||||||||| |||||| |
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| T |
27358142 |
acaggtggatgcattcactgagacagcattcaaagggaatccagcagcagtatgtttattagaagaagataaagatgatgaatggttgcaagcattagct |
27358241 |
T |
|
| Q |
174 |
gctgagttcaa |
184 |
Q |
| |
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|||||||||| |
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| T |
27358242 |
tctgagttcaa |
27358252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 272
Target Start/End: Complemental strand, 32165357 - 32165187
Alignment:
| Q |
102 |
ttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaacatcaatgttacctgtt |
201 |
Q |
| |
|
||||| ||||| || ||||| |||||||| ||||| |||| || |||||||||||||||||| | |||| ||||| ||||||||| | || |||| |
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|
| T |
32165357 |
ttcaaagggaatccagcagctgtgtgtttattagaagaagataaagatgatgaatggttgcaatcagtagctgctgaattcaacatctcggaaacatgtt |
32165258 |
T |
|
| Q |
202 |
atttgattcctgtcaagggaaccactaatccccgttttcgtcttagatggtttactcccattgttgaggta |
272 |
Q |
| |
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|| ||| | || | | |||||| ||| ||| |||||| ||||||||||||||||||| ||||||||||| |
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| T |
32165257 |
atctgacttctattcatggaacctctattcctcgttttggtcttagatggtttactcctgttgttgaggta |
32165187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 44288205 - 44288314
Alignment:
| Q |
75 |
caggtggatgcttttactgagttggcgttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcag |
174 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||| |
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| T |
44288205 |
caggtggatgctttcactgagtcagcgttcaagggaaaccctgcagcagtgtgtttgttagaagaagagagggatgatgaatggttgcaagcattagcag |
44288304 |
T |
|
| Q |
175 |
ctgagttcaa |
184 |
Q |
| |
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|||||||||| |
|
|
| T |
44288305 |
ctgagttcaa |
44288314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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