View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0590_high_4 (Length: 354)
Name: NF0590_high_4
Description: NF0590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0590_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 163 - 326
Target Start/End: Original strand, 45316610 - 45316781
Alignment:
| Q |
163 |
tggtagggaaagaaaaatatgataagatggaataaaggatatgttgacatacatgcgtattgttccttctaccctatccctggtccatttgtaatgatat |
262 |
Q |
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| T |
45316610 |
tggtagggaaagaaaaatatgataagatggaataaaggatatgttgacatacatgcatattgttccttctaccctatccctggtccatttgtaatgatat |
45316709 |
T |
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| Q |
263 |
acttgcatggttagggtggttagtttggg--------acagacagactgttattccttcctcatcacccttg |
326 |
Q |
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| T |
45316710 |
acttgcatggttagggtggttagtttgggacagacaaacagacagactgttattccttcctcatcacccttg |
45316781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 6 - 166
Target Start/End: Complemental strand, 45306403 - 45306247
Alignment:
| Q |
6 |
agaaataaagaaaagtcgatatacactagaaaccaaaaccgtcgttctagagtggtaacaaaggaatcaaacctcaaccacaaacacacacaaaactagt |
105 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45306403 |
agaaagaaagaaaagtcgatatacattagaaaccaaaaccgtcgttctagagtggtaacaaaggaatcaaacctcaacc----acacacacaaaactagt |
45306308 |
T |
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| Q |
106 |
acatttaagagagtnnnnnnntaacagcaattacaagtatgaaggttagaaaaatgttggt |
166 |
Q |
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| T |
45306307 |
acatttaagagagtaaaaaaataacagcaattacaagtatgaagattagaaaaatgttggt |
45306247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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