View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0590_high_8 (Length: 252)

Name: NF0590_high_8
Description: NF0590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0590_high_8
NF0590_high_8
[»] chr4 (6 HSPs)
chr4 (1-223)||(26119856-26120078)
chr4 (1-223)||(26084294-26084516)
chr4 (1-223)||(26096569-26096791)
chr4 (13-218)||(26126518-26126723)
chr4 (13-218)||(26064574-26064779)
chr4 (6-223)||(26035921-26036138)
[»] chr1 (1 HSPs)
chr1 (49-221)||(6773244-6773416)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26120078 - 26119856
Alignment:
Q  1 gtttttaccaggaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26120078 gtttttaccaggaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgacttt 26119979  T
Q  101 cgaaggagaaggcatgggaccaagtcgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatgga 200  Q
     ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26119978 tgaaggagaaagcatgggaccaagtcgttttcaacgaggaactctttcatccatcatatcctggttatgacgggcttcatgctgctaaaagaactatgga 26119879  T
Q  201 tatatatctttttatgaacagca 223  Q
    |||||||||||||||||| ||||    
T  26119878 tatatatctttttatgaatagca 26119856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26084516 - 26084294
Alignment:
Q  1 gtttttaccaggaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgacttt 100  Q
    |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26084516 gtttataccacgaggatatttgtttacaattctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgacttt 26084417  T
Q  101 cgaaggagaaggcatgggaccaagtcgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatgga 200  Q
    ||||||  || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26084416 cgaagggtaatgcatgggaccaagccgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatgga 26084317  T
Q  201 tatatatctttttatgaacagca 223  Q
    |||||||||||||||||||||||    
T  26084316 tatatatctttttatgaacagca 26084294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26096791 - 26096569
Alignment:
Q  1 gtttttaccaggaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgacttt 100  Q
    |||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26096791 gtttataccaggaggatatttgtttacaattgtggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgacttt 26096692  T
Q  101 cgaaggagaaggcatgggaccaagtcgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatgga 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||| ||||||||||||||||    
T  26096691 cgaaggagaaagcatgggaccaagtcgttttcaacgaggaactcttttatccgtcgcatcctggttatgacgggcttcatgcttctaaaagaactatgga 26096592  T
Q  201 tatatatctttttatgaacagca 223  Q
    |||||||||||||||||||||||    
T  26096591 tatatatctttttatgaacagca 26096569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 26126723 - 26126518
Alignment:
Q  13 aggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaaggagaagg 112  Q
    |||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |    
T  26126723 aggatatgggtttacaattctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggctgcacgactttcaaaagagaatg 26126624  T
Q  113 catgggaccaagtcgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttt 212  Q
    |||||||||||| |||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26126623 catgggaccaaggcgttttcaacgaggaactcttttatccgtcgcatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttt 26126524  T
Q  213 tatgaa 218  Q
    ||||||    
T  26126523 tatgaa 26126518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 26064779 - 26064574
Alignment:
Q  13 aggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaaggagaagg 112  Q
    |||||||  ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| | ||||| |||||||| |    
T  26064779 aggatatgggtttacaattctggtttcttctatattagaccaaccattccttcaattgagcttttggatcgtgtggcggcaaggctttccaaggagaaag 26064680  T
Q  113 catgggaccaagtcgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttt 212  Q
    |||||||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  26064679 catgggaccaagccgtttttaacgaggaactcttttatccatcgcatcctggttatgacgggcttcatgctgctaaaaggactatggatatgtacctttt 26064580  T
Q  213 tatgaa 218  Q
    ||||||    
T  26064579 tatgaa 26064574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 26036138 - 26035921
Alignment:
Q  6 taccaggaggatatttgtttacaatgctggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaag 105  Q
    ||||| ||||||||  ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| ||||| |||    
T  26036138 taccatgaggatatgggtttacaattccggtttcttctatatcagaccaaccattccttcaattgagcttttggaccgtgtcgcgacacggctttccaag 26036039  T
Q  106 gagaaggcatgggaccaagtcgttttcaacgaggaactctttcatccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatat 205  Q
    |||   ||||||||||||| |||||||||||||||||| ||| |||| ||||| ||||||||||| |||||||||||||||| ||||||||||||||| |    
T  26036038 gaggttgcatgggaccaagccgttttcaacgaggaactattttatccgtcacaccctggttatgaagggcttcatgctgctagaagaactatggatatgt 26035939  T
Q  206 atctttttatgaacagca 223  Q
    |||| |||||||||||||    
T  26035938 atctctttatgaacagca 26035921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 221
Target Start/End: Complemental strand, 6773416 - 6773244
Alignment:
Q  49 agaccaaccattccttcaattgagcttttggaccgtgtggcagcacgactttcgaaggagaaggcatgggaccaagtcgttttcaacgaggaactctttc 148  Q
    ||||||||  |||||||||||||||||||||| || || || |  || ||||| || ||||| |||||||| ||||  ||||| || || ||||| |||     
T  6773416 agaccaacacttccttcaattgagcttttggatcgcgttgcggaccggctttctaaagagaaagcatgggatcaagcagtttttaatgaagaactttttt 6773317  T
Q  149 atccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacag 221  Q
    | || ||||||||||||||||| || ||||||||||| || ||||| |||||||| || ||||||||||||||    
T  6773316 acccttcacatcctggttatgatggacttcatgctgcaaagagaacaatggatatgtacctttttatgaacag 6773244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2135 times since January 2019
Visitors: 3811