View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0590_low_1 (Length: 566)
Name: NF0590_low_1
Description: NF0590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0590_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 50 - 544
Target Start/End: Original strand, 41955283 - 41955774
Alignment:
| Q |
50 |
cagaccgattttataagaataagttaaacccaatataaaaatttaattcaatgttaaacatgaaaaaatattaatatacaagaaattactcccaaacatg |
149 |
Q |
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| T |
41955283 |
cagaccgattttataagaataagttaaatccaatataaaaatttaattcaatgttaaacacgaaaaa-tattaatatacaagaaattactcccaaacatg |
41955381 |
T |
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| Q |
150 |
annnnnnnnnnnnn---acaagaccctcaagcatgatttacnnnnnnnaaggaaaaatatacatacccttaaatcatcattatagtgtagaaatagaaat |
246 |
Q |
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| T |
41955382 |
aattttttttattttttacaagatcctcaagcatgatttactttttttaaggaaaaatatacatacccttaaatcatcattatagtgtagaaatagaaat |
41955481 |
T |
|
| Q |
247 |
acacgagttatcaaattaatttctgtatattatcgaagtatttatataaatgctaaataatatactttacacttaagaactttacttgaagatgcatgct |
346 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41955482 |
acacgaattatcaaattaatttctgtatattatcgaagtatttatataaatgctacataatatactttacacttaagaactttacttgaagatgcatgct |
41955581 |
T |
|
| Q |
347 |
ctcaaccagaaacaaaaatattctcgcccatccaatagtccccactctatttcacatctcattcatcctttcccctatttgtgtatgtcttattagccag |
446 |
Q |
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| T |
41955582 |
ctcaaccagaaacaaaaatattcttgcccatccaatagtccccactctatttca-----cattcatcctttcccctatttgtgtatgtcttattagccag |
41955676 |
T |
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| Q |
447 |
gttcaccatgcatgggtatattaactcccatcatttttaacccaaaagaaaaccaaataaataaaagcctatccattactcacgataatattgatgat |
544 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41955677 |
gttcaccatgcatgggtatattaactcccatcatttttaacccaaaagaaaaccaaataaataaaagcttatccattactcacgataatattgatgat |
41955774 |
T |
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