View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0590_low_12 (Length: 302)

Name: NF0590_low_12
Description: NF0590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0590_low_12
NF0590_low_12
[»] chr7 (1 HSPs)
chr7 (64-180)||(14699617-14699733)
[»] chr6 (1 HSPs)
chr6 (70-176)||(8551572-8551678)
[»] chr5 (4 HSPs)
chr5 (68-179)||(41642871-41642982)
chr5 (70-180)||(4154667-4154777)
chr5 (86-183)||(25439355-25439452)
chr5 (86-150)||(20283752-20283816)
[»] scaffold0854 (1 HSPs)
scaffold0854 (70-181)||(1015-1126)
[»] chr1 (2 HSPs)
chr1 (70-180)||(4229173-4229283)
chr1 (116-181)||(38301206-38301270)
[»] chr8 (1 HSPs)
chr8 (181-240)||(4348911-4348970)
[»] chr4 (1 HSPs)
chr4 (70-180)||(53305254-53305359)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 14699617 - 14699733
Alignment:
Q  64 gaagagagagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtg 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14699617 gaagagagagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtg 14699716  T
Q  164 tctagttatcattcctc 180  Q
    |||||||||||||||||    
T  14699717 tctagttatcattcctc 14699733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 8551678 - 8551572
Alignment:
Q  70 agagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagt 169  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8551678 agagagtgtgtagtggttttaccaaactgcccttgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctaat 8551579  T
Q  170 tatcatt 176  Q
    |||||||    
T  8551578 tatcatt 8551572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 41642982 - 41642871
Alignment:
Q  68 agagagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtcta 167  Q
    |||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||    
T  41642982 agagagtgtgtgtattggctttaccaaactgccattgatttgaggttgaaataacaaaattgtccatgatgttgatattgtgtctaaaattttgtgtcta 41642883  T
Q  168 gttatcattcct 179  Q
    ||||||||||||    
T  41642882 gttatcattcct 41642871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 4154667 - 4154777
Alignment:
Q  70 agagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagt 169  Q
    |||| ||| ||||||||||||| || |||||||  | || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4154667 agagggtgcgtagtggttttacaaagctgcccttaacttaaggttgaaataacaaaattgcctatggtgttggtattgtgtctaaaattttgtgtctagt 4154766  T
Q  170 tatcattcctc 180  Q
    |||||||||||    
T  4154767 tatcattcctc 4154777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 25439452 - 25439355
Alignment:
Q  86 ttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagttatcattcctctaa 183  Q
    ||||||| ||||| ||| || || ||||||||||| ||||| | |||||||||||| | ||||| | | ||||||||||||| |||||||| ||||||    
T  25439452 ttttaccgaactgtcctggaattaaggttgaaatatcaaaactacccatggtgttgattttgtggccagaattttgtgtctatttatcatttctctaa 25439355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 20283752 - 20283816
Alignment:
Q  86 ttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgt 150  Q
    ||||||||||||||||| ||||| |||| |||||  ||||| | |||||||||||| | ||||||    
T  20283752 ttttaccaaactgccctggatttaaggtggaaatgtcaaaactacccatggtgttgattttgtgt 20283816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 70 - 181
Target Start/End: Complemental strand, 1126 - 1015
Alignment:
Q  70 agagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagt 169  Q
    |||| ||||||||||||||||| || |||||||  | || |||||||||| ||||||  ||||||||||||| ||||||||||||||||||||||||| |    
T  1126 agagggtgtgtagtggttttacaaagctgcccttaacttaaggttgaaatgacaaaaaagcccatggtgttgatattgtgtctaaaattttgtgtctaat 1027  T
Q  170 tatcattcctct 181  Q
    ||||||||||||    
T  1026 tatcattcctct 1015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 4229283 - 4229173
Alignment:
Q  70 agagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagt 169  Q
    |||| ||||||| ||||||||| || |||||||  | || |||||||||| ||||||  |||||||||||||||||||||||||||||||||| ||||||    
T  4229283 agagggtgtgtattggttttacaaagctgcccttaacttaaggttgaaatgacaaaaaagcccatggtgttggtattgtgtctaaaattttgtatctagt 4229184  T
Q  170 tatcattcctc 180  Q
    |||||||||||    
T  4229183 tatcattcctc 4229173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 38301270 - 38301206
Alignment:
Q  116 aaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagttatcattcctct 181  Q
    |||| |||||| || ||||||||||||||||||||| |||| |||||| ||||||||| |||||||    
T  38301270 aaatgacaaaactgtccatggtgttggtattgtgtccaaaa-tttgtggctagttatcgttcctct 38301206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 4348911 - 4348970
Alignment:
Q  181 taagatttaagctgagaaggaaattcgtataaaacacaaattcagaagtattcatttctc 240  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  4348911 taagatttaagctgagaaggaaatccgtataaaacacaaattcaggagtatccatttctc 4348970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 53305254 - 53305359
Alignment:
Q  70 agagtgtgtgtagtggttttaccaaactgccctcgatttgaggttgaaataacaaaattgcccatggtgttggtattgtgtctaaaattttgtgtctagt 169  Q
    |||| |||||| |||||||||| || |||||||  | || |||||||||| |||||| ||     | |||||||||||||| ||||||||||||||||||    
T  53305254 agagggtgtgtggtggttttacaaagctgcccttaacttaaggttgaaatgacaaaactg-----gatgttggtattgtgtttaaaattttgtgtctagt 53305348  T
Q  170 tatcattcctc 180  Q
    |||||||||||    
T  53305349 tatcattcctc 53305359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 9 times since January 2019
Visitors: 3832