View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0590_low_16 (Length: 251)
Name: NF0590_low_16
Description: NF0590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0590_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 3367317 - 3367471
Alignment:
| Q |
29 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcgaatctgcaaacagaaccaaataattcaaaaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3367317 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcagatctgcaaacagaaccaaataattcaaaaa |
3367416 |
T |
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| Q |
129 |
caaagattaagccaccaaatatgatagattaaatggtaaacataacaaaacacaata |
185 |
Q |
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| T |
3367417 |
caaagattaagccaccaaatatggtagattaaatggtaaac--aacaaaacacaata |
3367471 |
T |
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Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 54188229 - 54188383
Alignment:
| Q |
29 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcgaatctgcaaacagaaccaaataattcaaaaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54188229 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacacttaaagtcattggcagatctgcaaacagaaccaaataattcaaaaa |
54188328 |
T |
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| Q |
129 |
caaagattaagccaccaaatatgatagattaaatggtaaacataacaaaacacaata |
185 |
Q |
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| T |
54188329 |
caaagattaagccaccaaatatggtagattaaatggtaaac--aacaaaacacaata |
54188383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 8570939 - 8570795
Alignment:
| Q |
29 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcgaatctgcaaacagaaccaaataattcaaaaa |
128 |
Q |
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| T |
8570939 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcagatctg----------caaataattcaaaaa |
8570850 |
T |
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| Q |
129 |
caaagattaagccaccaaatatgatagattaaatggtaaacataacaaaacacaata |
185 |
Q |
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| T |
8570849 |
caaagattaagccacctaatatggtagattaaatggtaaac--aacaaaacacaata |
8570795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 5992093 - 5992046
Alignment:
| Q |
41 |
agatgccactgttcccatcttggtgcaagccatcaatcacgcttgaag |
88 |
Q |
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| T |
5992093 |
agatgctactgctccgatcttggtgcaagccatcaatcacacttgaag |
5992046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 28696899 - 28696755
Alignment:
| Q |
29 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcgaatctgcaaacagaaccaaataattcaaaaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
28696899 |
agtttatacctcagatgccactgttcccatcttggtgcaagccatcaatcacgcttgaagtcattggcagatctg----------caaataattcaaaaa |
28696810 |
T |
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| Q |
129 |
caaagattaagccaccaaatatgatagattaaatggtaaacataacaaaacacaata |
185 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |
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| T |
28696809 |
caaagattaagccacctaatatggtagattaaatggtaaac--aacaaaacacaata |
28696755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 45402860 - 45402814
Alignment:
| Q |
203 |
tctactcgctgacatcatctatattctatttcaaatgctatgcttgt |
249 |
Q |
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| T |
45402860 |
tctactcgctgacatcatctctattctatttcaaatgctatgcttgt |
45402814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 19611811 - 19611763
Alignment:
| Q |
203 |
tctactcgctgacatcatctatattctatttcaaatgctatgcttgtat |
251 |
Q |
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| T |
19611811 |
tctactccctgacatcatctctattctatttcaaatgctatgcttgtat |
19611763 |
T |
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