View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0590_low_18 (Length: 250)
Name: NF0590_low_18
Description: NF0590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0590_low_18 |
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| [»] scaffold0635 (2 HSPs) |
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Alignment Details
Target: scaffold0635 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 291 - 418
Alignment:
| Q |
1 |
aaaaaataatctaccgtagagttttgacaaaaaagagattttagagagagacaatctttcataatggacccaaaattagatgaatcaatcatatgcttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
291 |
aaaaaataatctaccgtagagttttgacaaaaaagagattttagagagagacaatctttcataatggacccaaaattagatgaatcaatcatatgcttat |
390 |
T |
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| Q |
101 |
taaaagtctatcgcctcccatgtgacat |
128 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
391 |
taaaagtctatcgcctcccatgtgacat |
418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0635; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 515 - 577
Alignment:
| Q |
160 |
tttgatagtttggagtttgatttaaaaataaataagctttcaacaagatctgtgttaagcttt |
222 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
515 |
tttgatagtttggagtttgattaaaaaataaataagctttcaacaagatctgtgttaagcttt |
577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 10044417 - 10044290
Alignment:
| Q |
1 |
aaaaaataatctaccgtagagttttgacaaaaaagagattttagagagagacaatctttcataatggacccaaaattagatgaatcaatcatatgcttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10044417 |
aaaaaataatctaccgtagagttttgacaaaaaagagattttagagagagacaatctttcataatggacccaaaattagatgaatcaatcatatgcttat |
10044318 |
T |
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| Q |
101 |
taaaagtctatcgcctcccatgtgacat |
128 |
Q |
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| T |
10044317 |
taaaagtctatcgcctcccatgtgacat |
10044290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 10108493 - 10108366
Alignment:
| Q |
1 |
aaaaaataatctaccgtagagttttgacaaaaaagagattttagagagagacaatctttcataatggacccaaaattagatgaatcaatcatatgcttat |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10108493 |
aaaaaataatctaccgtagagttttgacaaaaaagagattttagagagagacaatctttcataatggacccaaaattagatgaatcaatcatatgcttat |
10108394 |
T |
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| Q |
101 |
taaaagtctatcgcctcccatgtgacat |
128 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
10108393 |
taaaagtctatcgcctcccatgtgacat |
10108366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 10044193 - 10044131
Alignment:
| Q |
160 |
tttgatagtttggagtttgatttaaaaataaataagctttcaacaagatctgtgttaagcttt |
222 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10044193 |
tttgatagtttggagtttgatttaaaaataaataagctttcaacaagatctgtgttaagcttt |
10044131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 10108269 - 10108207
Alignment:
| Q |
160 |
tttgatagtttggagtttgatttaaaaataaataagctttcaacaagatctgtgttaagcttt |
222 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10108269 |
tttgatagtttggagtttgattaaaaaataaataagctttcaacaagatctgtgttaagcttt |
10108207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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