View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0590_low_9 (Length: 339)
Name: NF0590_low_9
Description: NF0590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0590_low_9 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 26084682 - 26085007
Alignment:
| Q |
1 |
tcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcattatccgggtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084682 |
tcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcattatccgggtct |
26084781 |
T |
|
| Q |
101 |
ctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataattaggtataccaactctcttgatattgg |
200 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084782 |
ctttggtaaaatgggactttattagattcacaaaattttgcaatctcatcgtctaaggcaacaactagataattaggtataccaactctcttgatattgg |
26084881 |
T |
|
| Q |
201 |
tgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattttctctaataaatttaccaatctcgg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||| |
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| T |
26084882 |
tgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaactgcgattttctctaataaatttgccaatctcgg |
26084981 |
T |
|
| Q |
301 |
gttcaagaattcatcaggagcaacag |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
26084982 |
gttcaagaattcatcaggagcaacag |
26085007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 26120244 - 26120568
Alignment:
| Q |
1 |
tcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcattatccgggtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| || | |||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
26120244 |
tcccaactgcaaaaattctcttagaatacggaatttgagactggagacagcctcgccgtttggaatttttccaacagtatcaataccattatccgggtct |
26120343 |
T |
|
| Q |
101 |
ctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataattaggtataccaactctcttgatattgg |
200 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26120344 |
cttttgtaaaatgggacttgattcgattcacaaaactttgcaatctcatcgtctaaggcaacaactagataattaggtataccaactctcttgatattgg |
26120443 |
T |
|
| Q |
201 |
tgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattttctctaataaatttaccaatctcgg |
300 |
Q |
| |
|
||||||||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||| |
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| T |
26120444 |
tgaaccagatctcgaggatctctttcacatttgagtttgcaagggtaactatgatctctcgtttaactgcgattttctctaataaatttgccaatctcgg |
26120543 |
T |
|
| Q |
301 |
gttcaagaattcatcaggagcaaca |
325 |
Q |
| |
|
||||| | ||||||||||||||||| |
|
|
| T |
26120544 |
gttcacggattcatcaggagcaaca |
26120568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 26096957 - 26097281
Alignment:
| Q |
1 |
tcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcattatccgggtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||| |||||||||| | ||||| ||||||||||||||||||| | |||| ||||||||| |
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|
| T |
26096957 |
tcccaactgcaaaaattctcttagaatatgaaatttgagcgtggagacagccgcgccgttgaccatttttccaacagtatcaaaaccattgtccgggtct |
26097056 |
T |
|
| Q |
101 |
ctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataattaggtataccaactctcttgatattgg |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26097057 |
ctttggtaaaatgggactttattcgattcacaaaactttgcaatctcatcgtctaaggcaacaactagataattaggtataccaactctcttgatattgg |
26097156 |
T |
|
| Q |
201 |
tgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattttctctaataaatttaccaatctcgg |
300 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| ||| ||||||| || |
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|
| T |
26097157 |
tgaaccagacctcgaggatctccttcacatttgagtttgcaagggtaactataatctctcgtttaactgcgattttctctaatatctttgccaatcttgg |
26097256 |
T |
|
| Q |
301 |
gttcaagaattcatcaggagcaaca |
325 |
Q |
| |
|
||||| | ||||||||||||||||| |
|
|
| T |
26097257 |
gttcacggattcatcaggagcaaca |
26097281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 26064957 - 26065281
Alignment:
| Q |
1 |
tcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcattatccgggtct |
100 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||||| |||||||||||||| |
|
|
| T |
26064957 |
tcccagctgcaaaaattcccttagaatacgaaatttaagcccggagacagccgttctctttcctctttttccaacagcatcaataccattatccgggtct |
26065056 |
T |
|
| Q |
101 |
ctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataattaggtataccaactctcttgatattgg |
200 |
Q |
| |
|
|||| |||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
26065057 |
cttttgtaaaatgggacttgattcaattcacaaaactttgcaatctcatcgtctaaggcaacaactagataattagatataccaactctcttgatattag |
26065156 |
T |
|
| Q |
201 |
tgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattttctctaataaatttaccaatctcgg |
300 |
Q |
| |
|
|||||||||| || || || |||| ||||| ||||||||||||| ||||||||||||| ||||||| || ||||| ||||||| |||| |||||||||| |
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|
| T |
26065157 |
tgaaccagacttccaggatctccttaacattggagtttgcaagggcaactatgatctcttgtttaactgcgattttatctaatatatttgccaatctcgg |
26065256 |
T |
|
| Q |
301 |
gttcaagaattcatcaggagcaaca |
325 |
Q |
| |
|
||||| | ||||||||||||||||| |
|
|
| T |
26065257 |
gttcacggattcatcaggagcaaca |
26065281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 26126901 - 26127225
Alignment:
| Q |
1 |
tcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcattatccgggtct |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||| | | | ||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
26126901 |
tcccaactgcaaaaattctcttaaaatacgaaatttaagcccagagacagccgctctccctcctatttttccaacagtatcaatagcatcatccgggtct |
26127000 |
T |
|
| Q |
101 |
ctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataattaggtataccaactctcttgatattgg |
200 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||||| |||| ||| |||| ||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
26127001 |
cttttgtaaaacgggactttatttgattcacaaaactttgaaatttcatcgtctaaggcaacaactaaataattaggtataccgactctcttgatattgg |
26127100 |
T |
|
| Q |
201 |
tgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattttctctaataaatttaccaatctcgg |
300 |
Q |
| |
|
|||||||||||||||| || |||| ||||| ||||||||||||| ||||||||||||||| || || || |||||||||||||||||| |||||||||| |
|
|
| T |
26127101 |
tgaaccagacctcgagggtttccttaacattggagtttgcaagggcaactatgatctctcggtttactgcaattttctctaataaatttgccaatctcgg |
26127200 |
T |
|
| Q |
301 |
gttcaagaattcatcaggagcaaca |
325 |
Q |
| |
|
||||| | ||||||||||||||||| |
|
|
| T |
26127201 |
gttcacggattcatcaggagcaaca |
26127225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 26036309 - 26036634
Alignment:
| Q |
1 |
tcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagc------cccaccgtttggaatttttccaacagtatcaatatcattatcc |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||| || |||||| ||| ||| |
|
|
| T |
26036309 |
tcccaactgcaaaaattctcttagaatacgaaatttaagcccggagacagcatggttccctcc--ttg----ttttccaatggtgtcaataccatcatct |
26036402 |
T |
|
| Q |
95 |
gggtctctttggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaactagataattaggtataccaactctcttga |
194 |
Q |
| |
|
|||||||||| |||||||||||||| ||| |||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26036403 |
gggtctcttttgtaaaatgggacttgatttgtttcacaaaattttgaaatctcatcgtctaaagcaacaactagataattagatataccaactctcttga |
26036502 |
T |
|
| Q |
195 |
tattggtgaaccagacctcgagcattgccttcacatttgagtttgcaagggtaactatgatctctcgtttaaccgctattttctctaataaatttaccaa |
294 |
Q |
| |
|
|||| | |||||||||||| | ||| |||||||||| || |||||||| | |||||||||||||||||||| | |||||||| |||| ||| |||| |
|
|
| T |
26036503 |
tatttgagaaccagacctctaacatctccttcacattggaatttgcaagtgctactatgatctctcgtttaactgagattttctccaatatctttgccaa |
26036602 |
T |
|
| Q |
295 |
tctcgggttcaagaattcatcaggagcaacag |
326 |
Q |
| |
|
||| || |||| | ||||||||||| |||||| |
|
|
| T |
26036603 |
tcttggattcacggattcatcaggaacaacag |
26036634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 6773781 - 6773841
Alignment:
| Q |
152 |
tctaaggcaacaactagataattaggtataccaactctcttgatattggtgaaccagacct |
212 |
Q |
| |
|
||||| |||||||| | |||||||| ||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
6773781 |
tctaatgcaacaaccaaataattagatatgccaaccttcttgatattggtgaaccatacct |
6773841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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