View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0592_high_1 (Length: 1051)
Name: NF0592_high_1
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0592_high_1 |
 | |
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| [»] scaffold0038 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 793; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 793; E-Value: 0
Query Start/End: Original strand, 1 - 936
Target Start/End: Complemental strand, 28154363 - 28153427
Alignment:
| Q |
1 |
gcatcatgataatactactagacaaccaaaggattccacgtgcctctacttgtaaactatgaagaccagtgagatttcgaaatgaaaatggcaactcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28154363 |
gcatcatgataatactactagacaaccaaaggattccacgtgcctctacttgtaaactatgaagaccagtgagatttcgaaatgaaaatggcaactcttc |
28154264 |
T |
|
| Q |
101 |
tattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatatttgagactagaacaacatgagagatccagttgataaagaaaagtta |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28154263 |
tattgaagttcccaccaaaacaagtgataagatattttccatctctcctaatatttgagactagaacaacatgagagatccagttgataaagaaaagtta |
28154164 |
T |
|
| Q |
201 |
acttcatcggttggaaactcctaagcttgcagcaaccttcagcaattaggacttgaagtttatttaggcaaatagaatggtgaattgtaattaaatttat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28154163 |
acttcatcggttggaaactcctaagcttgcagcaaccttcagcaactaggacttgaagtttatttaggcaaacagaatggtgaattgtaattaaatttat |
28154064 |
T |
|
| Q |
301 |
acattttttaattgaaaatatttctaaattttggagaccagatatgtcaagtatccgttttagacttccac-gtagtctaaatttaactctttcatatct |
399 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28154063 |
acattttttaattgaaaatatttctaaatttcggagaccagatatgtcaagtatccgttttagacttccacagtagtctaaatttaactctttcatatct |
28153964 |
T |
|
| Q |
400 |
atgaacctctgcaaaaaggnnnnnnnnntgaataacctaaaagcgacgcattgacatacaagatgatacaaacagaactattactcaaaccttcaatgag |
499 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28153963 |
atgaacctctgcaaaaagg-aaaaaaaatgaataacctaaaagcgacgcattgacatacaagatgatataaacagaactattactcaaaccttcaatgag |
28153865 |
T |
|
| Q |
500 |
gaaggtgactcaaatgatttaagcaaacttcctgtgaaggatatctgtgccattctagaaatctcaaattatttggaagatgtccgggacctttgggaaa |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28153864 |
gaaggtgactcaaatgatttaagcaaacttcatgtgaaggatatctatgccattctagaaatctcaaattatttggaagatgtccgggatctttgggaaa |
28153765 |
T |
|
| Q |
600 |
gaagccacttttaatgatcaaagttttgaggttttttgtcttcttgaacgcatctcctttccatgctacttttacgtctccaacttctaatgacaggtaa |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
28153764 |
gaagccacttttaatgatcaaagttttgaggttttttgttttcttgaacgcatctcctttccatgctacttttacgtctccaacatccaatgacaggtaa |
28153665 |
T |
|
| Q |
700 |
tccatacatataatttcaattctacttgttcccttgaagcacacac-nnnnnnnnnnncacaaatcagaagaaatctatcactaagtaatcaaaagagat |
798 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28153664 |
tccatacatataatttcaattctgcttgttcccttgaagcacacacaaaaaaaaaaaacacaaatcagaagaaatctatcactaagtaatcaaaagagat |
28153565 |
T |
|
| Q |
799 |
aaatcaaggataaagaaacagttttctatgcatcggggaagtattgtgaaatcattcagtcaattcagatgacgtaagacgactattaggtaacttggac |
898 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28153564 |
aaatcaaggataaagaaacagttttctatgaatcggggaagtattgtgaaatcattcagtcaattcagatgacgtaggacgactattaggtaacttggat |
28153465 |
T |
|
| Q |
899 |
atggcgagtttcttaggacaataattagttcgtatgta |
936 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
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| T |
28153464 |
atggtgagtttcttaggacaataattagttcgtatgta |
28153427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 28178327 - 28178237
Alignment:
| Q |
66 |
ccagtgagatttcgaaatgaaaatggcaactcttctattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatattt |
156 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||||| ||||||||||||| ||||| |||||| ||||||||||| |||||||| |||| |
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| T |
28178327 |
ccagtgatatttttaaatgaaaatcacaactcttctatggaagttcccaccagaacaactgatgatatattttccatgtctcctaacattt |
28178237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 28224373 - 28224299
Alignment:
| Q |
82 |
atgaaaatggcaactcttctattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatattt |
156 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||| || || |||||| |||||||||||||||||||| |||| |
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|
| T |
28224373 |
atgaaaatgacaactcttctatggaagttcccaccagaaaaactgatgatatattttccatctctcctaacattt |
28224299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 532 - 668
Target Start/End: Complemental strand, 28141597 - 28141461
Alignment:
| Q |
532 |
tgtgaaggatatctgtgccattctagaaatctcaaattatttggaagatgtccgggacctttgggaaagaagccacttttaatgatcaaagttttgaggt |
631 |
Q |
| |
|
||||||||||| || ||||||| || | ||| ||||||||||||||||| | ||||||||| |||| || |||||||| || ||||||||||||| |
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|
| T |
28141597 |
tgtgaaggataactacgccattccagtactcttaaattatttggaagatgctcaagacctttggaaaagcgacctcttttaataataaaagttttgaggt |
28141498 |
T |
|
| Q |
632 |
tttttgtcttcttgaacgcatctcctttccatgctac |
668 |
Q |
| |
|
||| ||||||| || |||||||||||||| |||| |
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| T |
28141497 |
tttccatcttctttaattcatctcctttccattctac |
28141461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 29828530 - 29828442
Alignment:
| Q |
68 |
agtgagatttcgaaatgaaaatggcaactcttctattgaagttcccac-caaaacaagtgatgagatattttccatctctcctaatattt |
156 |
Q |
| |
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|||||||||| |||||||||||||||| |||| ||| ||||||||||| ||||||| || | | ||||| ||||||| ||||||||||| |
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|
| T |
29828530 |
agtgagattttgaaatgaaaatggcaattcttttatggaagttcccacacaaaacatgtca-gttatattctccatctttcctaatattt |
29828442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 24871 - 24797
Alignment:
| Q |
82 |
atgaaaatggcaactcttctattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatattt |
156 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| || || |||||| |||||||||||||||||||| |||| |
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|
| T |
24871 |
atgaaaatgacaactcttctatggaagttcccaccagaaaaactgatgatatattttccatctctcctaacattt |
24797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 280 - 358
Target Start/End: Original strand, 56151 - 56229
Alignment:
| Q |
280 |
gtgaattgtaattaaatttatacattttttaattgaaaatatttctaaattttggagaccagatatgtcaagtatccgt |
358 |
Q |
| |
|
||||||| ||||||||| |||| ||||||| ||||||||||||||||||| ||||| | || |||||| |||||||| |
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|
| T |
56151 |
gtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggagatcggagatgtcatgtatccgt |
56229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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