View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0592_high_13 (Length: 255)
Name: NF0592_high_13
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0592_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3783632 - 3783393
Alignment:
| Q |
1 |
atctctctcataaatgaacaataaatgaagcaaagtctaacttgtcaagtgcagcccttatttttgcacattttaattataagcgtagtagtattgttga |
100 |
Q |
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|||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3783632 |
atctctttcataaatgaacaataaatgaagcaaaatttaacttgtcaagtgcagcccttatttttgcacattttaatcataagcgtagtagtattgttga |
3783533 |
T |
|
| Q |
101 |
aatcacgcattctctatggatacaaacattattgtactttcattacgtgacgacaaactaatcacttgttaaatccttcatcattgagccaccacataat |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3783532 |
aatcacgcaatctctatggatacaaacattattgtactttcattacgtgacgacaaactaatcacttgttaaatccttcatcattgagccaccacataat |
3783433 |
T |
|
| Q |
201 |
aacttgatcttcatcatcacaaaaccacatacccattact |
240 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
3783432 |
aacttgatcttcatcatcacaaaaccacatacccagtact |
3783393 |
T |
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