View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0592_high_15 (Length: 251)

Name: NF0592_high_15
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0592_high_15
NF0592_high_15
[»] chr1 (9 HSPs)
chr1 (1-239)||(9241974-9242212)
chr1 (1-239)||(9364832-9365070)
chr1 (1-239)||(9337973-9338208)
chr1 (1-234)||(9466173-9466406)
chr1 (1-187)||(9300529-9300718)
chr1 (42-203)||(8927430-8927591)
chr1 (42-203)||(8939853-8940014)
chr1 (1-111)||(9257067-9257177)
chr1 (1-79)||(8962739-8962817)
[»] scaffold0690 (2 HSPs)
scaffold0690 (1-239)||(2041-2276)
scaffold0690 (1-239)||(5040-5280)
[»] chr6 (1 HSPs)
chr6 (1-239)||(15909830-15910065)
[»] chr3 (1 HSPs)
chr3 (1-239)||(9171938-9172176)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 9242212 - 9241974
Alignment:
Q  1 cagactggatccacaatttgcttgaagaaggagatatacaaatccctattgatgaagagggagattttagaattccaaaaaagttggcaactgtgggact 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9242212 cagactggatccacaatttgcttgaaggaggagatatacaaatccctattgatgaagagggagattttagaattccaaaaaaattggcaactgtgggact 9242113  T
Q  101 atggtgtatccaatggcaccctttgcatcgtccgacaatgaaatctgtgatacaaatgcttcaaggagagggggacatgttaaaagtaccaactaatcct 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9242112 atggtgtatccaatggcaccctttgcatcgtccggcaatgaaatttgtgatacaaatacttcaaggagagggggacatgttaaaagtaccaactaatcct 9242013  T
Q  201 ttcggaccaacaactacaactaatacaaatgctaatatt 239  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  9242012 ttcgggccaacaactacaacttatacaaatgctaatatt 9241974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9364832 - 9365070
Alignment:
Q  1 cagactggatccacaatttgcttgaagaaggagatatacaaatccctattgatgaagagggagattttagaattccaaaaaagttggcaactgtgggact 100  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9364832 cagactggatccacaatttgcttgaaggaggagatatacatatccctattgatgaagagggagattttagaattccaaaaaaattggcaactgtgggact 9364931  T
Q  101 atggtgtatccaatggcaccctttgcatcgtccgacaatgaaatctgtgatacaaatgcttcaaggagagggggacatgttaaaagtaccaactaatcct 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || ||||||||     
T  9364932 atggtgtatccaatggcaccctttgcaccgtccgacaatgaaatatgtgatacaaatgcttcaaggagagggggacaagttaaaagtgcctactaatccg 9365031  T
Q  201 ttcggaccaacaactacaactaatacaaatgctaatatt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9365032 ttcggaccaacaactacaactaatacaaatgctaatatt 9365070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9337973 - 9338208
Alignment:
Q  1 cagactggatccacaatttgcttgaagaaggagatatacaaatccctattgatgaagagggagattttagaattccaaaaaagttggcaactgtgggact 100  Q
    |||||||||||||||||||||||||||   |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  9337973 cagactggatccacaatttgcttgaag---gagagatacaaatccctattgatgaagacggagattttagaattccaaaaaaattggcaactgtgggact 9338069  T
Q  101 atggtgtatccaatggcaccctttgcatcgtccgacaatgaaatctgtgatacaaatgcttcaaggagagggggacatgttaaaagtaccaactaatcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| || ||||||||     
T  9338070 atggtgtatccaatggcaccctttgcatcgtccgacaatgaaatctgtgatgcaaatgctccaaggagagggggacaagttaaaagtgcctactaatccg 9338169  T
Q  201 ttcggaccaacaactacaactaatacaaatgctaatatt 239  Q
    || |||||||||||||||||||||| ||||| |||||||    
T  9338170 tttggaccaacaactacaactaataaaaatgttaatatt 9338208  T

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Target: chr1; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 9466406 - 9466173
Alignment:
Q  1 cagactggatccacaatttgcttgaagaaggagatatacaaatccctattgatgaagagggagattttagaattccaaaaaagttggcaactgtgggact 100  Q
    |||| ||||||||| ||||||||||||  ||||| ||||||||||||||||| |||||||||||||| || |||||||||||  |||| | ||| |||||    
T  9466406 cagattggatccacgatttgcttgaagggggagacatacaaatccctattgacgaagagggagatttcaggattccaaaaaaaatggcgattgttggact 9466307  T
Q  101 atggtgtatccaatggcaccctttgcatcgtccgacaatgaaatctgtgatacaaatgcttcaaggagagggggacatgttaaaagtaccaactaatcct 200  Q
      |||| ||||| ||||| ||| ||||||||||  | |||||| |||||||||||||||| ||||| || || |||| ||||||||| || |  ||||||    
T  9466306 tcggtgcatccagtggcaacctatgcatcgtccatccatgaaaactgtgatacaaatgctacaaggtgatggagacaagttaaaagtccccagcaatcct 9466207  T
Q  201 ttcggaccaacaactacaactaatacaaatgcta 234  Q
    || || || |||||| |||||||| ||| |||||    
T  9466206 tttgggcctacaacttcaactaattcaactgcta 9466173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 9300529 - 9300718
Alignment:
Q  1 cagactggatccacaatttgcttgaagaaggagatatacaaatccctattgatgaaga---gggagattttagaattccaaaaaagttggcaactgtggg 97  Q
    |||| |||||||||| |||  |||||| |||||| |||||||||||||| ||||||||   ||  ||||| |||||| |||||||  |||||| ||||||    
T  9300529 cagattggatccacagtttagttgaaggaggagacatacaaatccctatagatgaagaacaggatgatttcagaattgcaaaaaaaatggcaattgtggg 9300628  T
Q  98 actatggtgtatccaatggcaccctttgcatcgtccgacaatgaaatctgtgatacaaatgcttcaaggagagggggacatgttaaaagt 187  Q
    | ||||||| || || ||||| ||| ||||||||||| | |||||| ||||| | |||||| | ||||||||||| |||| | |||||||    
T  9300629 attatggtgcattcagtggcaacctatgcatcgtccgtccatgaaaactgtgttgcaaatgttacaaggagagggagacaagctaaaagt 9300718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 8927430 - 8927591
Alignment:
Q  42 atccctattgatgaagagggagattttagaattccaaaaaagttggcaactgtgggactatggtgtatccaatggcaccctttgcatcgtccgacaatga 141  Q
    ||||| ||||||||||||||||||| ||||||| |||||||  | |||| ||| ||||| ||||| || || |||||| |  ||||||| ||| | ||||    
T  8927430 atcccaattgatgaagagggagattgtagaattgcaaaaaaactagcaattgtcggactttggtgcattcagtggcactccgtgcatcggccgtccatga 8927529  T
Q  142 aatctgtgatacaaatgcttcaaggagagggggacatgttaaaagtaccaactaatcctttc 203  Q
    || ||||| | || ||||||||||||||||| ||||  |||||||| || || |||||||||    
T  8927530 aaactgtggtgcagatgcttcaaggagagggagacaaattaaaagttcccaccaatcctttc 8927591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 8939853 - 8940014
Alignment:
Q  42 atccctattgatgaagagggagattttagaattccaaaaaagttggcaactgtgggactatggtgtatccaatggcaccctttgcatcgtccgacaatga 141  Q
    ||||| ||||||||||||||||||||||||||| |||| ||  | || | ||| ||||| ||||| || || |||||| |  ||||||| ||| | ||||    
T  8939853 atcccaattgatgaagagggagattttagaattgcaaagaaactagcgattgtcggactttggtgcattcagtggcactccgtgcatcgaccgtccatga 8939952  T
Q  142 aatctgtgatacaaatgcttcaaggagagggggacatgttaaaagtaccaactaatcctttc 203  Q
    |||||||| | || ||||||||||||||||| ||||  |||||||| || || |||||||||    
T  8939953 aatctgtggttcagatgcttcaaggagagggagacaaattaaaagttcccaccaatcctttc 8940014  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 9257177 - 9257067
Alignment:
Q  1 cagactggatccacaatttgcttgaagaaggagatatacaaatccctattgatgaagagggagattttagaattccaaaaaagttggcaactgtgggact 100  Q
    |||| |||||||||  ||||||| ||| || ||| ||||| ||| |||| |||||||||||||||||||||||| | ||||| |||||||  ||||||||    
T  9257177 cagattggatccacggtttgcttaaaggagaagaaatacatatcgctatagatgaagagggagattttagaattgcgaaaaaattggcaatcgtgggact 9257078  T
Q  101 atggtgtatcc 111  Q
     ||||| ||||    
T  9257077 ttggtgcatcc 9257067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 8962739 - 8962817
Alignment:
Q  1 cagactggatccacaatttgcttgaagaaggagatatacaaatccctattgatgaagagggagattttagaattccaaa 79  Q
    |||| |||||||||  |||| ||||||  ||||||||||| ||||||||||||||||| ||||||| ||||||| ||||    
T  8962739 cagattggatccacggtttgtttgaagggggagatatacatatccctattgatgaagatggagattatagaattgcaaa 8962817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2041 - 2276
Alignment:
Q  1 cagactggatccacaatttgcttgaagaaggagatatacaaatccctattgatgaagagggagattttagaattccaaaaaagttggcaactgtgggact 100  Q
    |||||||||||||||||||| ||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || || ||    
T  2041 cagactggatccacaatttgtttgaag---gagatatacaaatccctattgatgaagagagagattttagaattccaaaaaaattggcaaccgtcggtct 2137  T
Q  101 atggtgtatccaatggcaccctttgcatcgtccgacaatgaaatctgtgatacaaatgcttcaaggagagggggacatgttaaaagtaccaactaatcct 200  Q
     ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||| ||||||    
T  2138 gtggtgtatccaatggcaccctttacatcgaccgacaatgaaatctgtgataaaaatgcttcaagcagaggcggacaagttaaaagtaccaacaaatcct 2237  T
Q  201 ttcggaccaacaactacaactaatacaaatgctaatatt 239  Q
    |||||||||||||||| |||||| |||||| | ||||||    
T  2238 ttcggaccaacaactaaaactaagacaaattccaatatt 2276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5040 - 5280
Alignment:
Q  1 cagactggatccacaatttgcttgaagaaggagatatacaaatccctattgatgaagagggagattttagaattccaaaaa-----agttggcaactgtg 95  Q
    |||||||||||||||||||||||||||   |||| |||  |||||||||||||||||| || |||||||||  ||||||||     | ||||||||||||    
T  5040 cagactggatccacaatttgcttgaag---gagagataataatccctattgatgaagacggggattttagatatccaaaaattaaaatttggcaactgtg 5136  T
Q  96 ggactatggtgtatccaatggcaccctttgcatcgtccgacaatgaaatctgtgatacaaatgcttcaaggagagggggacatgttaaaagtaccaacta 195  Q
     ||||||| ||||||| |||||||||| || |||||| | | ||||||||| |||||||||||||||| |||||||||||||  ||||||||||||||||    
T  5137 agactatgttgtatcctatggcaccctatgaatcgtctggcgatgaaatctctgatacaaatgcttcacggagagggggacaaattaaaagtaccaacta 5236  T
Q  196 atcctttcggaccaacaactacaactaatacaaatgctaatatt 239  Q
    |||  |||| ||||||||||||||| ||||||||||||||||||    
T  5237 atctgttcgaaccaacaactacaaccaatacaaatgctaatatt 5280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 15910065 - 15909830
Alignment:
Q  1 cagactggatccacaatttgcttgaagaaggagatatacaaatccctattgatgaagagggagattttagaattccaaaaaagttggcaactgtgggact 100  Q
    |||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||    
T  15910065 cagactggatccacaatttgtttgaag---gagatatacaaatccctattgatgaagagggagattttagaattccaaaaaaattggcaaccgtcggtct 15909969  T
Q  101 atggtgtatccaatggcaccctttgcatcgtccgacaatgaaatctgtgatacaaatgcttcaaggagagggggacatgttaaaagtaccaactaatcct 200  Q
     ||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||| ||||||    
T  15909968 gtggtgtatccaatggcaccctttacatcgaccaacaatgaaatctgtgataaaaatgcttcaagcagaggcggacaagttaaaagtaccaacaaatcct 15909869  T
Q  201 ttcggaccaacaactacaactaatacaaatgctaatatt 239  Q
    |||||||||||||||| |||||| |||||| | ||||||    
T  15909868 ttcggaccaacaactaaaactaagacaaattccaatatt 15909830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9171938 - 9172176
Alignment:
Q  1 cagactggatccacaatttgcttgaagaaggagatatacaaatccctattgatgaagagggagattttagaattccaaaaaagttggcaactgtgggact 100  Q
    |||| |||||||||| ||||||||||| |||||| ||||||||||| || ||||| |||||||||||||||||| | ||||| |||||||  ||||||||    
T  9171938 cagattggatccacagtttgcttgaaggaggagaaatacaaatcccaatagatgatgagggagattttagaattgcgaaaaaattggcaatcgtgggact 9172037  T
Q  101 atggtgtatccaatggcaccctttgcatcgtccgacaatgaaatctgtgatacaaatgcttcaaggagagggggacatgttaaaagtaccaactaatcct 200  Q
     ||||| ||||||||||| ||| ||||||||||| | |||||| ||||||| |||||||| |||||||| || |||| |||| |||| ||  | || |||    
T  9172038 ttggtgcatccaatggcaacctatgcatcgtccgtctatgaaaactgtgatgcaaatgctgcaaggagatggagacaagttacaagttccttcaaaccct 9172137  T
Q  201 ttcggaccaacaactacaactaatacaaatgctaatatt 239  Q
    |  ||||| |||||| || ||||||||| | ||||||||    
T  9172138 tatggacctacaacttcatctaatacaactactaatatt 9172176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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