View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0592_high_2 (Length: 696)
Name: NF0592_high_2
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0592_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 219 - 610
Target Start/End: Original strand, 53755943 - 53756332
Alignment:
| Q |
219 |
caaaagcatgagaaagtgagtgagattgagatttgatttgaaacacacgtaccctttgacgaactccaagtgggtaaatgtcaccgtaagtaacattcca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53755943 |
caaaagcatgagaaagtgagtgagattgagatttgatttgaaacacacgtaccctttgacgaactccaagtgggtaaatgtcaccgtaagtaacattcca |
53756042 |
T |
|
| Q |
319 |
gttgaagaatttatagggatcttcagctgaagtaatgtgaaacaaagaaggagcaacacatagaagcaaggctccaacagcagctaaattgagagtcatt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53756043 |
gttgaagaatttatagggatcttcagctgaagtaatgtgaaacaaagaagtagaaacacatagaagcaaggctccaacagcagctaaattgagagtcatt |
53756142 |
T |
|
| Q |
419 |
ttgctcccacacacttaactaacaaaaactcttttgcctctctacgcggcaatgctaactctaaatagttgtaatgtttaattgnnnnnnnnnnnnnnnn |
518 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
53756143 |
ttgctcccacacacttaactaacaaaaaatcttttgcctctctacgcggcaatgcttactctaaatagttgtaatgtttaattg--gagagagagaaaga |
53756240 |
T |
|
| Q |
519 |
nncttttaaaagaggtgggggaggggtcagaaatgattagggaggtgcggtggaagaagagaagggagtgatgtgtactggtatgtattaaa |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53756241 |
gacttttaaaagaggtgggggaggggtcagaaatgattagggaggtgcggtggaagaagagaagggagtgatgtgtactggtatgtattaaa |
53756332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 53755734 - 53755867
Alignment:
| Q |
11 |
cagagaagaaagagcttgtaccatgagatgagaaagggttcattcaaactgttgaagacattgataatgaggttgtcgtttgtaacagaatgaatgtctg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53755734 |
cagagaagaaagagcttgtaccatgagatgagaaagggttcattcaaactgttgaagacattgataatgaggttgtcgtttgtaacagaatgaatgtctg |
53755833 |
T |
|
| Q |
111 |
gaccagggaattggccattgatcaatataccctg |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
53755834 |
gaccagggaattggccattgatcaatataccctg |
53755867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 8572674 - 8572776
Alignment:
| Q |
30 |
accatgagatgagaaagggttcattcaaactgttgaagacattgataatgaggttgtcgtttgtaacagaatgaatgtctggaccagggaattggccatt |
129 |
Q |
| |
|
||||||| |||||||| ||||||| ||| ||||||||||||||||||||||| || || ||||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
8572674 |
accatgaaatgagaaaaggttcatccaagctgttgaagacattgataatgagattatcatttgtcacagaatgaatgtctggtcctgggaattggccatt |
8572773 |
T |
|
| Q |
130 |
gat |
132 |
Q |
| |
|
||| |
|
|
| T |
8572774 |
gat |
8572776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 8572871 - 8572938
Alignment:
| Q |
278 |
cgaactccaagtgggtaaatgtcaccgtaagtaacattccagttgaagaatttatagggatcttcagc |
345 |
Q |
| |
|
||||| |||||||| ||||||||||| || ||||| |||||||||||||| | || ||||||||||| |
|
|
| T |
8572871 |
cgaacaccaagtggataaatgtcaccataggtaacgttccagttgaagaacctgtatggatcttcagc |
8572938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 345
Target Start/End: Original strand, 44037417 - 44037474
Alignment:
| Q |
288 |
gtgggtaaatgtcaccgtaagtaacattccagttgaagaatttatagggatcttcagc |
345 |
Q |
| |
|
|||| ||||||||||| ||||||| | |||||| ||||||| |||| ||||||||||| |
|
|
| T |
44037417 |
gtggataaatgtcaccataagtaaaagtccagtcgaagaatctataaggatcttcagc |
44037474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3035 times since January 2019
Visitors: 3831