View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0592_high_4 (Length: 452)
Name: NF0592_high_4
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0592_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 96 - 417
Target Start/End: Original strand, 13873501 - 13873822
Alignment:
| Q |
96 |
tgtctattaacattgaaacttgaaagaggttctgcatcataaccaaagaaaccagtttataagtccttcatttggctcatatttaattaaactaaaggaa |
195 |
Q |
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| T |
13873501 |
tgtctattaatattgaaacttgaaagaggttctgcatcataaccaaagaaaccagtttataagtccttcatttggctcatatttaatttaactaaaggaa |
13873600 |
T |
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| Q |
196 |
aaggagtgagtttcaatgattgtcattgaagaactgatagtttgtaatatgtgtatgggtacgttaattagtgaattttaaagttcattgtcactcnnnn |
295 |
Q |
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| T |
13873601 |
atggagtgagtttcaatgattgtcattgaagaactgatagtttgtaatatgtgtaagagtaccttaattagtgaattttaaagttcattgtcactcaaaa |
13873700 |
T |
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| Q |
296 |
nnntgaccaaagaaattttcaatgataaaactattggaaattcatttagttaagataatttgtttattaataatccctaggttctagttcaattgtcaaa |
395 |
Q |
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| T |
13873701 |
aaatgaccaaagaaaatttcaatgataaaactattggaaattcatttagttaagataatttgtttattagtaatccttaggttctagttcaattggcaaa |
13873800 |
T |
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| Q |
396 |
tatcaaaatggtatttgtcatt |
417 |
Q |
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| T |
13873801 |
tgtcaaaatggtatttgtcatt |
13873822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 98 - 417
Target Start/End: Original strand, 13877392 - 13877717
Alignment:
| Q |
98 |
tctattaacattgaaacttgaaagaggttctgcatcataaccaaagaaaccagtttataagtccttcatttggctcatatttaattaaactaaaggaaaa |
197 |
Q |
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| T |
13877392 |
tctattaacattgaaacttgaaagagattctttatcatagccaaaaaaaccagtttataagtccttcatttggctcatatttaataaatctaaaggaaat |
13877491 |
T |
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| Q |
198 |
ggagtgagt--ttcaatgattgtcattgaagaactgatagtttg----taatatgtgtatgggtacgttaattagtgaattttaaagttcattgtcactc |
291 |
Q |
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| T |
13877492 |
ggagtgagttcttcaatgattgtcattgaagaaccgatagcttgtagataataagtatatgagtatgttaattagtgaatttcaaagttctttgtcactc |
13877591 |
T |
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| Q |
292 |
nnnnnnntgaccaaagaaattttcaatgataaaactattggaaattcatttagttaagataatttgtttattaataatccctaggttctagttcaattgt |
391 |
Q |
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| T |
13877592 |
aaaaaaattaccaaagaaaatttcaatgataaaactattggaaattcatttagttaagataatttatttattagtaatccataggttctagctcaattga |
13877691 |
T |
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| Q |
392 |
caaatatcaaaatggtatttgtcatt |
417 |
Q |
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| T |
13877692 |
caaatatcgaaatggtatttgtcatt |
13877717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 194
Target Start/End: Original strand, 13864575 - 13864668
Alignment:
| Q |
101 |
attaacattgaaacttgaaagaggttctgcatcataaccaaagaaaccagtttataagtccttcatttggctcatatttaattaaactaaagga |
194 |
Q |
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| T |
13864575 |
attaacattgaaacttgaaagaggtttggtatcttagccaaaaaaaactttccataagtccttcatttagctcatatttaatttaattaaagga |
13864668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 370
Target Start/End: Complemental strand, 12957540 - 12957491
Alignment:
| Q |
321 |
taaaactattggaaattcatttagttaagataatttgtttattaataatc |
370 |
Q |
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| T |
12957540 |
taaaactattggaaatacatttagttaagataacttgtttgttagtaatc |
12957491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 13871344 - 13871412
Alignment:
| Q |
303 |
caaagaaattttcaatgataaaactattggaaattcatttagttaagataatttgtttattaataatcc |
371 |
Q |
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| T |
13871344 |
caaagcaaatttcaatgttaaaactgtttgaaatacatttagttaagatatcttgtttgttagtaatcc |
13871412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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