View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0592_high_7 (Length: 348)
Name: NF0592_high_7
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0592_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 319
Target Start/End: Complemental strand, 23993608 - 23993301
Alignment:
| Q |
10 |
gcagagaaaagctgaggtaatgtttatagtgttgagagttactgacttgaaagcttaactgttggtccattactttttatgctaggtcatgggaaatggt |
109 |
Q |
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| T |
23993608 |
gcagagaaaagctgaggtaatgtttatggtgttgagagttactgacttgaaagcttaactgttggtccattactttttatgctaggtcatgggaaatggt |
23993509 |
T |
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| Q |
110 |
ttttctgtctgttgttgtctttcacttttgcatacgaattttaaatcatcacttggattatttgctatgatttttgtgaagtggtatacaccatgatatg |
209 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23993508 |
ttttctgcctgttgctgtctttcacttttgcatacgaattttaaatcataacttggattattcgctatgatttttgtgaagtggtatacaccatgatatg |
23993409 |
T |
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| Q |
210 |
ctgccttaagaactgactggctataagtctataacagaattcaaaagagtctaatatagaagcagctataatgagtctgtctcagattagtaaattgtag |
309 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
23993408 |
ctgccttaagaactgactggctacaagtctataacagaattcaaaagagtctaatatagaagcagc--taatgagtctgtctcagattagtaaactgtag |
23993311 |
T |
|
| Q |
310 |
tggatatcct |
319 |
Q |
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|||||||||| |
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| T |
23993310 |
tggatatcct |
23993301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 55032292 - 55032336
Alignment:
| Q |
218 |
agaactgactggctataagtctataacagaattcaaaagagtcta |
262 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
55032292 |
agaactaactggctataagtctataaaagaattcaaaagagtcta |
55032336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 55032476 - 55032536
Alignment:
| Q |
215 |
ttaagaactgactggctataagtctataacagaattcaaaagagtctaatatagaagcagcta |
277 |
Q |
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||||||||| |||||||||||||||| |||||||||||||| | ||||||||||||||||| |
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| T |
55032476 |
ttaagaactaactggctataagtctag--cagaattcaaaagattataatatagaagcagcta |
55032536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 312
Target Start/End: Original strand, 55032641 - 55032673
Alignment:
| Q |
280 |
atgagtctgtctcagattagtaaattgtagtgg |
312 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
55032641 |
atgagtctgtctcagattagtaaactgtagtgg |
55032673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 106 - 319
Target Start/End: Complemental strand, 51478798 - 51478587
Alignment:
| Q |
106 |
tggtttttctgtctgttgttgtctttcacttttgcatacgaattttaaatcatcacttggattatttgctatgatttttgtgaagtggtatacaccatga |
205 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51478798 |
tggtttttctatctgttgctgtctttcacttttgcatacgaattttaaaccatcacttggattatttgctatgatttttgtgaagtggtatacaccatga |
51478699 |
T |
|
| Q |
206 |
tatgctgccttaagaactgactggctataagtctataacagaattcaaaagagtctaatatagaagcagctataatgagtctgtctcagattagtaaatt |
305 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | |
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| T |
51478698 |
tatgctgccttaagaactgactggctacaagtctataacagaattcaaaagagtctaatatagaagcagc--taatgagcctgtctcagattagtaaact |
51478601 |
T |
|
| Q |
306 |
gtagtggatatcct |
319 |
Q |
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|||||| ||||||| |
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| T |
51478600 |
gtagtgaatatcct |
51478587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 25661503 - 25661705
Alignment:
| Q |
10 |
gcagagaaaagctgaggtaatgtttatagtgttgagagttactgacttgaaagcttaactgttggtccattactttttatgctaggtcatgggaaatggt |
109 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||| |
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| T |
25661503 |
gcagagaaaagctgaggtaacgtttatggtgttgagagttactgacttgaaagcttaactgttggtccattactttttatgcgaagtcatggaaaatgg- |
25661601 |
T |
|
| Q |
110 |
ttttctgtctgttgttgtctttcacttttgcatacgaattttaaatcatcacttggattatttgctatgatttttgtgaagtggtatacaccatgatatg |
209 |
Q |
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|||| ||||| ||| |||||| |||||||| || |||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25661602 |
ttttatgtctcttgctgtcttccacttttgtgtatgaattttaaaacattacttggattatttgctatgatttttgtgaagtggtatgcaccatgatatg |
25661701 |
T |
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| Q |
210 |
ctgc |
213 |
Q |
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|||| |
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| T |
25661702 |
ctgc |
25661705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 7769621 - 7769530
Alignment:
| Q |
10 |
gcagagaaaagctgaggtaatgtttatagtgttgagagttactgacttgaaagcttaactgttggtccattactttttatgctaggtcatgg |
101 |
Q |
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| T |
7769621 |
gcagagaaaagttgaggtaatgtttatggtgttgagagttactgacttgaaggcttaactgttggtccattactttttatgctaggtcatgg |
7769530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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