View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0592_low_12 (Length: 376)
Name: NF0592_low_12
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0592_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 348
Target Start/End: Complemental strand, 32539581 - 32539242
Alignment:
| Q |
9 |
agcagagagatgagaatttggtattccacatgttgttgcaacttgtaaactattggaatttaattctgcaattatggttaaaagctcaattgaattcctc |
108 |
Q |
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| T |
32539581 |
agcagagagatgagaatttggtattccgcatgttgttgcaacttgtaaactattggaatttaattctgcaattatggttaaaagctcaattgaattcctc |
32539482 |
T |
|
| Q |
109 |
aaactttttatcttaagctcttttattgtcccttgatcatgtactaacttgtcaatattctcaatactcagtttcatcttcacaagaatctcactctcat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32539481 |
aaactttttatcttaagctcttttattgtcccttgatcatgtactaacttgtcaatattctcaatactcaatttcatcttcacaagaatctcactctcat |
32539382 |
T |
|
| Q |
209 |
tatcatatgattctgaactgttttttcttctgaccaagtaagaatgacacttctcaaagattgttttcctgaaaaaattgtcttttatatatctttcaac |
308 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32539381 |
tatcacatgattctgaactgttttttcttctgaccaagtaagaatgacacttctcaaagattgttttcctgaaaaaattgtcttttatatatctttcaac |
32539282 |
T |
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| Q |
309 |
gtagtcactgaggatactaaccaatgctctgattgcaact |
348 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
32539281 |
gtagtcactgaggatactaaccaatgctctgattgcaact |
32539242 |
T |
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