View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0592_low_13 (Length: 372)
Name: NF0592_low_13
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0592_low_13 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 102 - 359
Target Start/End: Original strand, 35991460 - 35991715
Alignment:
| Q |
102 |
aagtcattgcccagtaatgcacctacacatgagtatcacaaatccttaacaagcttgattagttgattgattgatgatgaacaatttctgggtgcccata |
201 |
Q |
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| T |
35991460 |
aagtcattgcccagtaatgcacctacacatgagtatcacaaatccttaacaagcttgattagttgattgattgatgatgaacaatttctgggtgtccata |
35991559 |
T |
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| Q |
202 |
tgtgtatatataatattttttggtgatgtgatgataactaaaaacttacacagacatgcatgcacacatatgcataataagccaagggatattccaagta |
301 |
Q |
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| T |
35991560 |
tgtgtatatataatattttttggtgatgtgattataactaaaaacttacacagacatgcatgcacacatatgcataataagccaagggatattccaagca |
35991659 |
T |
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| Q |
302 |
catcctacgttgagcaactagtaattcttacaaataaagtggaattcatcttgtgcct |
359 |
Q |
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| T |
35991660 |
catcctacgttgagcaactagtaattcttacaaataaagtgg--tccatcttgtgcct |
35991715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 335
Target Start/End: Original strand, 35980705 - 35980933
Alignment:
| Q |
101 |
aaagtcattgcccagtaatgcacctacacatgagtatcacaaatccttaacaagcttgattagttgattgattgatgatgaacaatttctgggtgcccat |
200 |
Q |
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| T |
35980705 |
aaagtcattgcccagtaatgcacttacacatgagtactatac-tccttaacaagctttatt----gattggttgatgatgaacaatttcacggtgttctt |
35980799 |
T |
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| Q |
201 |
atgtgtatatataatattttttggtgatgtgat-gataactaaaaacttacacagacatgcatgca-cacatatg-cataataagccaagggatattcca |
297 |
Q |
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| T |
35980800 |
atgtgtatttatagtatttgttggtgatgtgattgataaataaaaac----acagacatgcatgcagcaactagcacatattaagccaaaggatattcca |
35980895 |
T |
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| Q |
298 |
agtacatcctacgttgagcaactagtaattcttacaaa |
335 |
Q |
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| T |
35980896 |
agtacatcctatgttgagcaactagtaattcttacaaa |
35980933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 12325365 - 12325434
Alignment:
| Q |
206 |
tatatataatattttttggtgatgtg-atgataactaaaaacttacacagacatgcatgcacacatatgca |
275 |
Q |
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| T |
12325365 |
tatagataatattttttggtaatatggatgataactaacaacttacatagaca-gcatgcacacatatgca |
12325434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 47543 - 47625
Alignment:
| Q |
206 |
tatatataatattttttggtgatgtg-atgataactaaaaacttacacagacatgcatgcacacatatgcataataagccaagg |
288 |
Q |
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| T |
47543 |
tatagataatattttttgataatatggatgataactaacaacttacatagaca-gcatgcacacatatgcagaagaagctaagg |
47625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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