View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0592_low_14 (Length: 372)

Name: NF0592_low_14
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0592_low_14
NF0592_low_14
[»] chr4 (18 HSPs)
chr4 (4-224)||(1552924-1553144)
chr4 (221-343)||(1553504-1553626)
chr4 (132-210)||(1548729-1548807)
chr4 (9-118)||(1548583-1548692)
chr4 (24-113)||(12121631-12121720)
chr4 (24-118)||(1537941-1538035)
chr4 (24-118)||(55505279-55505373)
chr4 (24-125)||(1545597-1545698)
chr4 (24-113)||(1489535-1489624)
chr4 (24-113)||(1513578-1513667)
chr4 (28-116)||(640748-640836)
chr4 (85-125)||(6006151-6006191)
chr4 (25-127)||(546735-546837)
chr4 (24-118)||(1508177-1508271)
chr4 (85-125)||(3438798-3438838)
chr4 (68-124)||(7226101-7226157)
chr4 (87-125)||(7307684-7307722)
chr4 (85-125)||(370751-370791)
[»] chr3 (2 HSPs)
chr3 (30-125)||(514908-515003)
chr3 (25-125)||(51113956-51114056)
[»] chr8 (2 HSPs)
chr8 (85-125)||(32151125-32151165)
chr8 (128-185)||(18315515-18315572)
[»] chr2 (2 HSPs)
chr2 (131-202)||(45245389-45245460)
chr2 (30-118)||(44575675-44575763)
[»] chr1 (1 HSPs)
chr1 (85-117)||(43634029-43634061)
[»] chr5 (1 HSPs)
chr5 (128-174)||(12845345-12845391)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 1552924 - 1553144
Alignment:
Q  4 atgtcgaagaatattgcttgcaactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatc 103  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1552924 atgtcggagaaaattgcttgcaactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatc 1553023  T
Q  104 attgagaaagataactgctccatcaaagggaactcttctcgcatcaaggatgtcttgtttgctagtattccaaaactactcttctgaagtttgaacttta 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1553024 attgagaaagataactgctccatcaaagggaactcttctcgcatcaaggatgtcttgtttgctagtattccaaaactactcttctgaagtttgaacttta 1553123  T
Q  204 caatgtaagttatttttccag 224  Q
     ||||||||||||||||||||    
T  1553124 taatgtaagttatttttccag 1553144  T

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Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 221 - 343
Target Start/End: Original strand, 1553504 - 1553626
Alignment:
Q  221 ccagcagcaaggggtttatttacatctttattgtcaatattgcactatagcggtgtagcatggtgatatggccctccactactatgctataggcccgtcc 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1553504 ccagcagcaaggggtttatttacatctttattgtcaatattgcactatagcggtgtagcatggtgatacggccctccactactatgctataggcccgtcc 1553603  T
Q  321 ctgttgagagtagcggcaatagt 343  Q
    |||||||||||||||||||||||    
T  1553604 ctgttgagagtagcggcaatagt 1553626  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 1548729 - 1548807
Alignment:
Q  132 ggaactcttctcgcatcaaggatgtcttgtttgctagtattccaaaactactcttctgaagtttgaactttacaatgta 210  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||||    
T  1548729 ggaactcttctcgcatcaaggatgtcttgtttgctagtattcgaaaactactcttctgaagtttgacctctaaaatgta 1548807  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 1548583 - 1548692
Alignment:
Q  9 gaagaatattgcttgcaactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatcattga 108  Q
    |||||| | |||| |||||| ||||| || |||||| |||||||| || || || || |||||||||| |||||||||||||||||||| ||||||||||    
T  1548583 gaagaaaactgctcgcaactgagagaaattaatttggaaggttgttttcaattgcatgatgatgttgtcgcttcattggtattttcaagaccatcattga 1548682  T
Q  109 gaaagataac 118  Q
    ||||||||||    
T  1548683 gaaagataac 1548692  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 12121631 - 12121720
Alignment:
Q  24 caactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatcattgagaaag 113  Q
    ||||||||||||||| ||||||||  ||||||| ||||| ||  ||||||| |||| |||||| ||||||||||||||||||||||||||    
T  12121631 caactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctcattgatattttcaaggccatcattgagaaag 12121720  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 1537941 - 1538035
Alignment:
Q  24 caactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatcattgagaaagataac 118  Q
    |||||||||||||||||||||||| | ||| || |||||||| |||||||| || | |||||| |||||||||||||||| || |||||| ||||    
T  1537941 caactaagagagatcaatttgaaaaggtgtgttcaagtggatgatgatgttcttacctcattgatattttcaaggccatcgttaagaaagttaac 1538035  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 55505279 - 55505373
Alignment:
Q  24 caactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatcattgagaaagataac 118  Q
    ||||||||||||||||| ||||| ||||||  ||||||| ||  |  ||||||||  ||| ||||||||||||||||||||||||||||||||||    
T  55505279 caactaagagagatcaacttgaacggttgtgataaagtgcatactagtgttgttgactcaatggtattttcaaggccatcattgagaaagataac 55505373  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 1545698 - 1545597
Alignment:
Q  24 caactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatcattgagaaagataactgctc 123  Q
    |||||||||| |||||||||||  ||||||  ||||||| ||  | ||||| |||||| ||| ||||| |||||||||||||||||||  ||||||||||    
T  1545698 caactaagagtgatcaatttgaggggttgtgataaagtgcatgctaatgttattgctttattagtattatcaaggccatcattgagaagtataactgctc 1545599  T
Q  124 ca 125  Q
    ||    
T  1545598 ca 1545597  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 1489535 - 1489624
Alignment:
Q  24 caactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatcattgagaaag 113  Q
    ||||||||||||||||||||||||   |||  | ||||| || |||||||| |||| |||||| |||||||||||||||| || ||||||    
T  1489535 caactaagagagatcaatttgaaaatgtgtggtcaagtgcatgatgatgttcttgcctcattgatattttcaaggccatcgttaagaaag 1489624  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 1513578 - 1513667
Alignment:
Q  24 caactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatcattgagaaag 113  Q
    ||||| ||||||||||||||||||  ||||  ||||||| ||  ||||||| |||| |||||| |||||||||||||||| || ||||||    
T  1513578 caactgagagagatcaatttgaaatattgttctaaagtgaatggtgatgttcttgcctcattgatattttcaaggccatcgttaagaaag 1513667  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 640836 - 640748
Alignment:
Q  28 taagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatcattgagaaagata 116  Q
    |||||||| ||||||| || ||||||  ||||||| ||  | |||| ||||  ||| ||||||||||||||||||||||||||||||||    
T  640836 taagagaggtcaatttaaagggttgtaataaagtgaatgctaatgtcgttgactcaatggtattttcaaggccatcattgagaaagata 640748  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 6006191 - 6006151
Alignment:
Q  85 tggtattttcaaggccatcattgagaaagataactgctcca 125  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  6006191 tggtatttacaaggccatcattgagaaagataactgctcca 6006151  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 546837 - 546735
Alignment:
Q  25 aactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatcattgagaaagataactgctcc 124  Q
    ||||||||||||||||||| |  | ||||  ||||||| ||  | |||  ||||||||| || |||||| |||||||||||||||||||||||  |||||    
T  546837 aactaagagagatcaatttaagggcttgtaataaagtgaatgttaatgccgttgcttcaatgttatttttaaggccatcattgagaaagataatagctcc 546738  T
Q  125 atc 127  Q
    |||    
T  546737 atc 546735  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 1508177 - 1508271
Alignment:
Q  24 caactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatcattgagaaagataac 118  Q
    ||||||||||||||||||||||||  | ||| ||| ||   |  ||||||| |||| |||||| |||||||||||||||| |||||||| |||||    
T  1508177 caactaagagagatcaatttgaaatatggtcctaaggtacgtggtgatgttcttgcctcattgatattttcaaggccatcgttgagaaaaataac 1508271  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 3438798 - 3438838
Alignment:
Q  85 tggtattttcaaggccatcattgagaaagataactgctcca 125  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  3438798 tggtattttcaaagccatcattgagaaaggtaactgctcca 3438838  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 7226101 - 7226157
Alignment:
Q  68 tgatgttgttgcttcattggtattttcaaggccatcattgagaaagataactgctcc 124  Q
    |||| ||||||| ||| |||| | |||||||||||||||||||||||||| ||||||    
T  7226101 tgatattgttgcctcaatggtttcttcaaggccatcattgagaaagataattgctcc 7226157  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 7307722 - 7307684
Alignment:
Q  87 gtattttcaaggccatcattgagaaagataactgctcca 125  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  7307722 gtatcttcaaggccatcattgagaaagataattgctcca 7307684  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 370791 - 370751
Alignment:
Q  85 tggtattttcaaggccatcattgagaaagataactgctcca 125  Q
    |||||||||||||||||||||| |||||||||  |||||||    
T  370791 tggtattttcaaggccatcattcagaaagatagttgctcca 370751  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 514908 - 515003
Alignment:
Q  30 agagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatcattgagaaagataactgctcca 125  Q
    |||||||||||||| | |||||||  ||||||| || || ||||||||||  || ||||||||||||||||||||||||||||||||  |||||||    
T  514908 agagagatcaatttaagaggttgtaataaagtgcattataatgttgttgccccaatggtattttcaaggccatcattgagaaagatagttgctcca 515003  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 51113956 - 51114056
Alignment:
Q  25 aactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatcattgagaaagataactgctcc 124  Q
    ||||||||||||| ||||| || |||||| |||||||| ||  | || ||||||| ||| || ||||||||||||||||||||||| | ||||| |||||    
T  51113956 aactaagagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctcaatgatattttcaaggccatcattgagagaaataacagctcc 51114055  T
Q  125 a 125  Q
    |    
T  51114056 a 51114056  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 32151165 - 32151125
Alignment:
Q  85 tggtattttcaaggccatcattgagaaagataactgctcca 125  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32151165 tggtattttcaaggccatcattgagaaagataactgctcca 32151125  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 18315515 - 18315572
Alignment:
Q  128 aaagggaactcttctcgcatcaaggatgtcttgtttgctagtattccaaaactactct 185  Q
    |||||||||||||||||| |||| |||| |||||||||||| ||||  ||||||||||    
T  18315515 aaagggaactcttctcgcgtcaaagatgccttgtttgctagcattctcaaactactct 18315572  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 45245389 - 45245460
Alignment:
Q  131 gggaactcttctcgcatcaaggatgtcttgtttgctagtattccaaaactactcttctgaagtttgaacttt 202  Q
    |||||||||| |||| ||||||||| |||||||||||| ||||  ||||| |||| || |||||||||||||    
T  45245389 gggaactcttgtcgcgtcaaggatgccttgtttgctagcattctgaaactgctctacttaagtttgaacttt 45245460  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 44575675 - 44575763
Alignment:
Q  30 agagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatcattgagaaagataac 118  Q
    |||||| ||||||||| |  ||||  ||| ||| ||| ||||||| |||| || ||| || ||||||||||||||||||||||| ||||    
T  44575675 agagagctcaatttgagaaattgtgataatgtgcatcgtgatgttcttgcctcgttgatactttcaaggccatcattgagaaagttaac 44575763  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 43634061 - 43634029
Alignment:
Q  85 tggtattttcaaggccatcattgagaaagataa 117  Q
    |||||||||||||||||||||||||||||||||    
T  43634061 tggtattttcaaggccatcattgagaaagataa 43634029  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 12845391 - 12845345
Alignment:
Q  128 aaagggaactcttctcgcatcaaggatgtcttgtttgctagtattcc 174  Q
    ||||||||||||||| |||||| ||||| ||||||| ||||||||||    
T  12845391 aaagggaactcttcttgcatcatggatgccttgttttctagtattcc 12845345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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