View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0592_low_16 (Length: 337)

Name: NF0592_low_16
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0592_low_16
NF0592_low_16
[»] chr6 (2 HSPs)
chr6 (13-326)||(30838035-30838345)
chr6 (243-326)||(735080-735163)
[»] chr4 (2 HSPs)
chr4 (194-296)||(24071976-24072077)
chr4 (82-135)||(8714290-8714343)
[»] chr1 (4 HSPs)
chr1 (197-300)||(51727056-51727157)
chr1 (197-269)||(19554227-19554297)
chr1 (60-140)||(9529514-9529593)
chr1 (197-268)||(35284168-35284237)
[»] chr2 (2 HSPs)
chr2 (19-118)||(6723507-6723606)
chr2 (85-133)||(15232065-15232113)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 30838345 - 30838035
Alignment:
Q  13 acatgtaaccaccgttatatctcctaaaagaatataatctcctcatgttcatgtattcaatatgacttgtttgaatcatgaatgtcatatgagaatgatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  30838345 acatgtaaccaccgttatatctcctaaaagaatataatctcctcatgttcatgtattcaatatgatttgtttgaatcatgaatctcatatgagaatgatt 30838246  T
Q  113 attatataagttagaaatacattttgatgataaatatatacttaaattatcaca-ttatgtattgtgtgtctactatctatcaagcatagttttaaaaac 211  Q
    ||||||||||||||||||||||||||||||| |    ||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||    
T  30838245 attatataagttagaaatacattttgatgatga----atactaaaattatcacatttatgtattgtgtgtctaccatctattaagcatagttttaaaaac 30838150  T
Q  212 tggctcgatgatcgactcggtaaggtactagtggatcattgagtcattgatcgaaccattaagtcataggttcaactgcatgactgaacaagattaaact 311  Q
    ||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||| | ||||| | ||||||| |||||| ||||||||||||||||    
T  30838149 tggctcggtgatcgactcggtaaggtactggtgggtcattgagtcattaatcgaaccactgagtcacaagttcaaccgcatgattgaacaagattaaact 30838050  T
Q  312 gaattactcgttcat 326  Q
    |||| ||||||||||    
T  30838049 gaatgactcgttcat 30838035  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 326
Target Start/End: Original strand, 735080 - 735163
Alignment:
Q  243 tggatcattgagtcattgatcgaaccattaagtcataggttcaactgcatgactgaacaagattaaactgaattactcgttcat 326  Q
    ||||||| |||||||||| |||||||||| ||| |  |||| |||||||||||||||   |||||||| |||| ||||| ||||    
T  735080 tggatcactgagtcattggtcgaaccattgagtaactggttgaactgcatgactgaatcggattaaaccgaatgactcgatcat 735163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 24071976 - 24072077
Alignment:
Q  194 aagcatagttttaaaaactggctcgatgatcgactcggtaaggtactagtggatcattgagtcattgatcg-aaccattaagtcataggttcaactgcat 292  Q
    ||||||||||||||||||||||||  |||||||||| ||||||  ||||||||||| |||||||||| ||| |||||||  |||| ||||| ||| ||||    
T  24071976 aagcatagttttaaaaactggctcactgatcgactcagtaagg--ctagtggatcactgagtcattggtcgaaaccattgggtcacaggttgaaccgcat 24072073  T
Q  293 gact 296  Q
    ||||    
T  24072074 gact 24072077  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 8714290 - 8714343
Alignment:
Q  82 tttgaatcatgaatgtcatatgagaatgattattatataagttagaaatacatt 135  Q
    ||||||||||| | ||||| ||||||| | ||||||||| ||||||||||||||    
T  8714290 tttgaatcatgcaagtcatgtgagaataaatattatatatgttagaaatacatt 8714343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 300
Target Start/End: Original strand, 51727056 - 51727157
Alignment:
Q  197 catagttttaaaaactggctcgatgatcgactcggt-aaggtactagtggatcattgagtcattgatcgaaccattaagtcataggttcaactgcatgac 295  Q
    ||||||||||||||  | | |||  ||||||||||| ||||||||   |||||| ||||||||||||||||||||| |||||| |||| ||| |||||||    
T  51727056 catagttttaaaaatcgacccgaaaatcgactcggtcaaggtact---ggatcactgagtcattgatcgaaccattgagtcattggttgaaccgcatgac 51727152  T
Q  296 tgaac 300  Q
    |||||    
T  51727153 tgaac 51727157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 19554297 - 19554227
Alignment:
Q  197 catagttttaaaaactggctcgatgatcgactcggtaaggtactagtggatcattgagtcattgatcgaacca 269  Q
    |||||||||||||   |||||||||||||||||||| ||||  || ||||||| |||||||||||||||||||    
T  19554297 catagttttaaaactcggctcgatgatcgactcggtgaggt--tactggatcactgagtcattgatcgaacca 19554227  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 9529514 - 9529593
Alignment:
Q  60 ttcatgtattcaatatgacttgtttgaatcatgaatgtcatatgagaatgattattatataagttagaaatacattttgat 140  Q
    |||||||||| |||||||  | ||||| | ||||||||||| ||||||||| ||||||||| |||||||||||| ||||||    
T  9529514 ttcatgtattaaatatgatgt-tttgagtgatgaatgtcatgtgagaatgaatattatatatgttagaaatacaatttgat 9529593  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 35284168 - 35284237
Alignment:
Q  197 catagttttaaaaactggctcgatgatcgactcggtaaggtactagtggatcattgagtcattgatcgaacc 268  Q
    ||||||||||||||  || ||| | ||||||||||||||||  |||||||||| |||||||||| |||||||    
T  35284168 catagttttaaaaatcggatcggtcatcgactcggtaaggt--tagtggatcactgagtcattggtcgaacc 35284237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 6723507 - 6723606
Alignment:
Q  19 aaccaccgttatatctcctaaaagaatataatctcctca-tgttcatgtattcaatatgacttgtttgaatcatgaatgtcatatgagaatgattattat 117  Q
    |||||||||| |||||  ||||||||||| ||||||||| | ||||| ||||||||||||||| ||  ||||||  ||||||| ||||||| | ||||||    
T  6723507 aaccaccgttgtatctaataaaagaatatgatctcctcatttttcatatattcaatatgactt-ttgaaatcatacatgtcatttgagaattaatattat 6723605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 15232113 - 15232065
Alignment:
Q  85 gaatcatgaatgtcatatgagaatgattattatataagttagaaataca 133  Q
    ||||||| |||||||||||||||| | |||||||||||||||| |||||    
T  15232113 gaatcattaatgtcatatgagaataaatattatataagttagatataca 15232065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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