View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0592_low_17 (Length: 336)
Name: NF0592_low_17
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0592_low_17 |
 | |
|
| [»] scaffold0690 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 18)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 3 - 307
Target Start/End: Original strand, 9242274 - 9242578
Alignment:
| Q |
3 |
catctccaacaatatcataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgtt |
102 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9242274 |
catctccaacaataacataccgtaactgtatacatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctactgtt |
9242373 |
T |
|
| Q |
103 |
cccttagccgcagtcatggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
9242374 |
cccttagccgcagtcatggatacaatactttgatttttcgaacacatcttggccaaaccaaaatctgtaatttggggaatgaaattgtcatctaacaaga |
9242473 |
T |
|
| Q |
203 |
cattattaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaactt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9242474 |
cattattaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccattggctatacctagagcaattttttgcaactt |
9242573 |
T |
|
| Q |
303 |
atccc |
307 |
Q |
| |
|
||||| |
|
|
| T |
9242574 |
atccc |
9242578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 7 - 307
Target Start/End: Complemental strand, 9364766 - 9364466
Alignment:
| Q |
7 |
tccaacaatatcataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttccct |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9364766 |
tccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttccct |
9364667 |
T |
|
| Q |
107 |
tagccgcagtcatggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacatt |
206 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
9364666 |
tagctgcagtcatggatacgatactttgattttttgaacatatcttggccaaaccaaaatctgtaattttgggagtgaaattgtcatctaacaagacatt |
9364567 |
T |
|
| Q |
207 |
attaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcc |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9364566 |
atgaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaataccatttgctatgcctagagcaattttttgcaacttatcc |
9364467 |
T |
|
| Q |
307 |
c |
307 |
Q |
| |
|
| |
|
|
| T |
9364466 |
c |
9364466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 307
Target Start/End: Complemental strand, 9337907 - 9337607
Alignment:
| Q |
7 |
tccaacaatatcataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttccct |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9337907 |
tccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttccct |
9337808 |
T |
|
| Q |
107 |
tagccgcagtcatggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacatt |
206 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
9337807 |
tagctgcagtcatggatacgacactttgattttttgaacatatcttggccaaaccaaaatctgtaattttgggagtgaaattgtcatctaacaagacatt |
9337708 |
T |
|
| Q |
207 |
attaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatcc |
306 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9337707 |
atgaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaataccatttgctatgcctagagcaattttttgcaacttatcc |
9337608 |
T |
|
| Q |
307 |
c |
307 |
Q |
| |
|
| |
|
|
| T |
9337607 |
c |
9337607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 3 - 307
Target Start/End: Complemental strand, 9300467 - 9300163
Alignment:
| Q |
3 |
catctccaacaatatcataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgtt |
102 |
Q |
| |
|
|||||||| ||| | ||| || ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
9300467 |
catctccagcaacaacatgccataactatatatatcggacttataagagacattcccaaagtttctagaaaaaacttcgggtgccatgtatcctaatgtt |
9300368 |
T |
|
| Q |
103 |
cccttagccgcagtcatggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaa |
202 |
Q |
| |
|
|| || ||||| ||||| |||| | |||||||||||||||| || ||||| |||||||| || ||||||||||| || | ||||||||||| | ||| | |
|
|
| T |
9300367 |
cctttggccgcggtcatagatatagtactttgatttttcgagcacatcttagccaaaccgaagtctgtaatttttggggttaaattgtcatcgatcaaga |
9300268 |
T |
|
| Q |
203 |
cattattaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaactt |
302 |
Q |
| |
|
| |||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
9300267 |
cgttatgaggattgatgtcaaagtgaagaattctttgatcacaaccttggtgaagatactctattccattggctatgcctagagcaatttgttgcaactt |
9300168 |
T |
|
| Q |
303 |
atccc |
307 |
Q |
| |
|
||||| |
|
|
| T |
9300167 |
atccc |
9300163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 9466468 - 9466763
Alignment:
| Q |
3 |
catctccaacaatatcataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgtt |
102 |
Q |
| |
|
|||||||||||| | |||||| ||||| |||||||| |||||||| |||||||| || || ||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
9466468 |
catctccaacaacaacataccataactatatatatcagacttatatgagacattcccgaagtttctagaaaaaacttcgggtgccatgtagcctaacgtt |
9466567 |
T |
|
| Q |
103 |
cccttagccgcagtcatggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaa |
202 |
Q |
| |
|
|| || || || ||||| || || ||||| |||||||||| || ||||| |||||||| || ||||||||||||||| ||||||| ||||||||||| | |
|
|
| T |
9466568 |
cctttggctgcggtcatagacactgtacttcgatttttcgagcacatcttagccaaaccgaagtctgtaattttgggagtgaaattctcatctaacaaga |
9466667 |
T |
|
| Q |
203 |
cattattaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgca |
298 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||| ||||| |
|
|
| T |
9466668 |
cattatgaggattgatgtcaaagtgaagaattctttgatcacaaccttggtgaagatactcaattccattggctatgcctagagcaatttgttgca |
9466763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 8927309 - 8927028
Alignment:
| Q |
18 |
cataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtc |
117 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||||||||| |||| ||||||| | || |||||| |
|
|
| T |
8927309 |
cataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaacctaatgttcccctggctgcagtc |
8927210 |
T |
|
| Q |
118 |
atggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattga |
217 |
Q |
| |
|
|| |||||| | || |||||||| || || | ||| || ||||| || || | ||||| ||||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
8927209 |
atcgatacagtgctatgatttttagagcacagcttcgctaaaccgaagtccgatatttttggaatgaaattgtcatctaacaagacattgtggggattga |
8927110 |
T |
|
| Q |
218 |
tgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaa |
299 |
Q |
| |
|
| |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || || ||||||||||||| |||||| |
|
|
| T |
8927109 |
tatcaaagtgaagaattctatgatcacaaccttggtgaagatactcaatcccattggcaatgcctagagcaatttgttgcaa |
8927028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 46 - 307
Target Start/End: Original strand, 9257286 - 9257547
Alignment:
| Q |
46 |
taagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtcatggatacaatactttgatttttcgaac |
145 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| ||||||||||| |||| |||||| | || |||||||| |||| | ||||||||||||| || | |
|
|
| T |
9257286 |
taagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaatgttcctctcgctgcagtcatagatatagtactttgattttttgagc |
9257385 |
T |
|
| Q |
146 |
atatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaagtgtagaattctttgatcaca |
245 |
Q |
| |
|
| ||||| ||||||||||||| ||||||||| || | ||||||||||| | ||| ||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9257386 |
acatcttagccaaaccaaaatttgtaatttttggggttaaattgtcatcgatcaagacattatgaggattgatgtcaaagtgaagaattctttgatcaca |
9257485 |
T |
|
| Q |
246 |
accttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatccc |
307 |
Q |
| |
|
|| |||||| |||||||| || ||||| ||||| ||||||||||||| ||||||||| |||| |
|
|
| T |
9257486 |
actttggtgaagatactcgattccattggctatgcctagagcaatttgttgcaacttgtccc |
9257547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 28 - 299
Target Start/End: Complemental strand, 8962652 - 8962381
Alignment:
| Q |
28 |
ctgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtcatggatacaa |
127 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||| |||| |||||| ||||||||||||||||| |||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
8962652 |
ctgtatatatcagatttataagagacattcccaaagtttcgagaaaatacttcaggtgccatgtatcctaatgttcccctagccgcagtcatcgatacaa |
8962553 |
T |
|
| Q |
128 |
tactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaagtg |
227 |
Q |
| |
|
|| |||||||||| || || | |||||| |||||||| |||| ||||| ||| | ||||||||||||||||| | ||| | |||||||| ||||| || |
|
|
| T |
8962552 |
tagtttgatttttggagcacaacttggctaaaccaaagtctgatatttttggagtaaaattgtcatctaacaagatattgtgcggattgatatcaaaatg |
8962453 |
T |
|
| Q |
228 |
tagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaa |
299 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||| ||||| || || ||||||||||| | |||||| |
|
|
| T |
8962452 |
aagaattctttgatcacagccctggtgaagatactcaattccattggcaatgcctagagcaatctgttgcaa |
8962381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 8939735 - 8939454
Alignment:
| Q |
18 |
cataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtc |
117 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||||||||| |||| |||||| | || || ||| |
|
|
| T |
8939735 |
cataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaccctaaagttcccctggctgcggtc |
8939636 |
T |
|
| Q |
118 |
atggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattga |
217 |
Q |
| |
|
|| ||||| ||||||||||||| || || | ||| || ||||| || |||| ||||| |||| ||||||||||||||| || ||||||| ||||||| |
|
|
| T |
8939635 |
attgatactgtactttgatttttggagcacagcttagctaaaccgaagtctgatatttttggaacgaaattgtcatctaataatacattatgtggattga |
8939536 |
T |
|
| Q |
218 |
tgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaa |
299 |
Q |
| |
|
| || ||||| |||||||| |||||||| |||||||| ||||||||||| ||||| || || || |||||||||| |||||| |
|
|
| T |
8939535 |
tatcgaagtgaagaattctatgatcacagccttggtgaagatactcaatcccattggcaatgccaagagcaatttgttgcaa |
8939454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 234
Target Start/End: Original strand, 9125135 - 9125344
Alignment:
| Q |
25 |
taactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtcatggata |
124 |
Q |
| |
|
||||| || ||||| |||||| ||| |||||||||||||||| || ||||||||||||||||| || || | ||||| |||||||||||||||||| |
|
|
| T |
9125135 |
taactataaatatcagacttacgagaaacatttccaaaatttcgtgacaaaacttcaggtgccatatatcccaaggttcctctagccgcagtcatggata |
9125234 |
T |
|
| Q |
125 |
caatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaa |
224 |
Q |
| |
|
||| ||| ||| || ||||||| ||||| | ||||| |||| |||||| ||| |||| ||||||||| ||||||||| | ||| ||||||||||| |
|
|
| T |
9125235 |
caacactaacattctttgaacataatttggcgagtccaaagtctgaaatttttggagtgaaggtgtcatctagcaaaacattgtgagggttgatgtcaaa |
9125334 |
T |
|
| Q |
225 |
gtgtagaatt |
234 |
Q |
| |
|
||| |||||| |
|
|
| T |
9125335 |
gtgaagaatt |
9125344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 9236157 - 9236447
Alignment:
| Q |
18 |
cataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtc |
117 |
Q |
| |
|
||||||||| || || ||||| ||||||||||| |||||||| || ||||| || |||||||||||||| ||||| || | ||||| | || |||||| |
|
|
| T |
9236157 |
cataccgtagctataaatatcagacttataagaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaaggttcctctcgctgcagtc |
9236256 |
T |
|
| Q |
118 |
atggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattga |
217 |
Q |
| |
|
|| || || | ||||| ||||||| ||| | || || | ||||| || || ||||||||| | ||||| ||||||| || ||||| | ||||||| |
|
|
| T |
9236257 |
atagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggactcaaattatcatctattaacacattgtgtggattga |
9236356 |
T |
|
| Q |
218 |
tgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatccct |
308 |
Q |
| |
|
| |||||||| || ||||| ||||||||||| || ||||||||||| || |||| | ||| ||||||||| ||||||||| ||||| |
|
|
| T |
9236357 |
tatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaacaccaagagcaattcgttgcaacttttccct |
9236447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 8861554 - 8861708
Alignment:
| Q |
22 |
ccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtcatgg |
121 |
Q |
| |
|
||||||||||| ||||| |||||| ||| ||||| ||||||||||| || | ||||||||| |||||||| || | ||||||||||| || ||||||| |
|
|
| T |
8861554 |
ccgtaactgtaaatatctgacttaagagacacattcccaaaatttcttgatagaacttcaggcgccatgtatcccaaggttcccttagcagctgtcatgg |
8861653 |
T |
|
| Q |
122 |
atacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaatttt |
176 |
Q |
| |
|
| |||| || |||| || ||||||| ||||| | ||||||||| | |||||| |
|
|
| T |
8861654 |
acacaacgctaagattcttggaacataatttggcgagaccaaaatccgaaatttt |
8861708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 248
Target Start/End: Complemental strand, 9378060 - 9377846
Alignment:
| Q |
34 |
atatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtcatggatacaatacttt |
133 |
Q |
| |
|
||||| ||||| ||||| |||||||| || ||||| || |||||||||||||| |||||||| | |||||| |||| || || || || || |||||| |
|
|
| T |
9378060 |
atatcagacttgtaagaaacatttccgaagtttcttgagaaaacttcaggtgcaatgtagcccaatgttcctctagctgcggttatagacaccgtacttt |
9377961 |
T |
|
| Q |
134 |
gatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaagtgtagaat |
233 |
Q |
| |
|
||||||| | ||| | || || | ||||| || |||||||| ||| | ||||| ||||||| || ||||| | |||||||| |||||||| || || |
|
|
| T |
9377960 |
gatttttgggacacagtttagcaagtccaaagtcagtaattttaggactcaaattatcatctattaacacattgtgtggattgatatcaaagtgaagtat |
9377861 |
T |
|
| Q |
234 |
tctttgatcacaacc |
248 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
9377860 |
tctatgatcacaacc |
9377846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 9069667 - 9069869
Alignment:
| Q |
25 |
taactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtcatggata |
124 |
Q |
| |
|
|||||||||||||| |||||| ||| |||||||||||||||| ||| | ||||| |||||||| || || | |||||| |||| || |||||||| | |
|
|
| T |
9069667 |
taactgtatatatcagacttaagagaaacatttccaaaatttcgagacactacttcgggtgccatatatcccaaggttcccctagcagctgtcatggaca |
9069766 |
T |
|
| Q |
125 |
caatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaa |
224 |
Q |
| |
|
| ||||| |||| || | ||||| ||||| | ||||| || | |||||| ||| |||| ||||||||||||||||| ||| ||||||||||| |
|
|
| T |
9069767 |
ctatactaagattcttggcacataatttggcgagcccaaagtcagaaatttttggagtgaaggaatcatctaacaaaacattgcgagggttgatgtcaaa |
9069866 |
T |
|
| Q |
225 |
gtg |
227 |
Q |
| |
|
||| |
|
|
| T |
9069867 |
gtg |
9069869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 9106347 - 9106430
Alignment:
| Q |
151 |
ttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaagtgtagaatt |
234 |
Q |
| |
|
||||| ||||||||||||| || ||| || |||| ||||||||| ||||||||| | ||| |||||||||||||| |||||| |
|
|
| T |
9106347 |
ttggcaaaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaatt |
9106430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 292
Target Start/End: Original strand, 9420547 - 9420709
Alignment:
| Q |
130 |
ctttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaagtgta |
229 |
Q |
| |
|
||||||||||| || || | || |||||||||||||| |||||||| |||| || ||||||||||| || || |||| ||||| || || ||||| | |
|
|
| T |
9420547 |
ctttgatttttagagcacaatttcgccaaaccaaaatcagtaatttttggaacaaacttgtcatctaataacacgttatagggattaatatcgaagtgaa |
9420646 |
T |
|
| Q |
230 |
gaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattt |
292 |
Q |
| |
|
||||| |||||||||| ||| ||||||||||| || || ||||| || |||||||||| |
|
|
| T |
9420647 |
gaatttgctgatcacaactcatgtgaagatactcaatacctttggctatgccaagagcaattt |
9420709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 292
Target Start/End: Original strand, 9437630 - 9437792
Alignment:
| Q |
130 |
ctttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaagtgta |
229 |
Q |
| |
|
||||||||||| ||||| | || |||||||||||||| |||||||| |||| || ||||||||||| | || |||| ||||| || || ||||| | |
|
|
| T |
9437630 |
ctttgatttttagaacacaatttcgccaaaccaaaatcagtaatttttggaacaaacttgtcatctaatagcacgttatggggattaatatcgaagtgaa |
9437729 |
T |
|
| Q |
230 |
gaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattt |
292 |
Q |
| |
|
||||| |||||||||| ||| ||||||||||| || || ||||| || |||||||||| |
|
|
| T |
9437730 |
gaatttgctgatcacaactcatgtgaagatactcaatacctttggctatgccaagagcaattt |
9437792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 10992894 - 10992829
Alignment:
| Q |
237 |
ttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaactt |
302 |
Q |
| |
|
||||||||||||||| || |||||||||| || || |||||||||| |||||||| |||||||| |
|
|
| T |
10992894 |
ttgatcacaaccttgatgaagatactcaactcctttagctatacctaaagcaatttcatgcaactt |
10992829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 307
Target Start/End: Complemental strand, 1979 - 1675
Alignment:
| Q |
3 |
catctccaacaatatcataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgtt |
102 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1979 |
catctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctaatgtt |
1880 |
T |
|
| Q |
103 |
cccttagccgcagtcatggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaa |
202 |
Q |
| |
|
|||||||| | ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||| | |
|
|
| T |
1879 |
cccttagctgtagtcatggatacattactttgatttttcgaacacatcttagccaaaccaaaatctgtgattttgggagtgaaattgtcatctagcaaga |
1780 |
T |
|
| Q |
203 |
cattattaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaactt |
302 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| || |
|
|
| T |
1779 |
tattatgaggattgatgtcaaagtgtaaaattctttgatcacaaccttggtggagatactcaatgccattagctatgcctagagcaatttgttgcaattt |
1680 |
T |
|
| Q |
303 |
atccc |
307 |
Q |
| |
|
||||| |
|
|
| T |
1679 |
atccc |
1675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 307
Target Start/End: Original strand, 15910127 - 15910431
Alignment:
| Q |
3 |
catctccaacaatatcataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgtt |
102 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15910127 |
catctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctaatgtt |
15910226 |
T |
|
| Q |
103 |
cccttagccgcagtcatggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaa |
202 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||| | |
|
|
| T |
15910227 |
cccttagctacagtcatggatacattactttgatttttcgaacacatcttagccaaaccaaaatctgtgattttgggagtgaaattgtcatctagcaaga |
15910326 |
T |
|
| Q |
203 |
cattattaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaactt |
302 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| || |
|
|
| T |
15910327 |
tattatgaggattgatgtcaaagtgtaaaattctttgatcacaaccttggtggagatactcaatgccattagctatgcctagagcaatttgttgcaattt |
15910426 |
T |
|
| Q |
303 |
atccc |
307 |
Q |
| |
|
||||| |
|
|
| T |
15910427 |
atccc |
15910431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 9171861 - 9171572
Alignment:
| Q |
18 |
cataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtc |
117 |
Q |
| |
|
|||||| || || |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||||| | || |||||| |
|
|
| T |
9171861 |
cataccatagctatatatatcagacttataagagacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgcagtc |
9171762 |
T |
|
| Q |
118 |
atggatacaatactttgatttttcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattga |
217 |
Q |
| |
|
|| |||| | ||||||||||||| || || | ||| |||||||| || ||||||||||| || ||||||||||||||| || || |||| |||||| | |
|
|
| T |
9171761 |
attgatatagtactttgattttttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggattaa |
9171662 |
T |
|
| Q |
218 |
tgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttgcaacttatccc |
307 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||| ||||||||| |||| |
|
|
| T |
9171661 |
tgtcaaagtgaagaattctttgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaacttgtccc |
9171572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 40 - 296
Target Start/End: Complemental strand, 27696369 - 27696113
Alignment:
| Q |
40 |
gacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctattgttcccttagccgcagtcatggatacaatactttgatttt |
139 |
Q |
| |
|
|||||||| || ||| | ||||| ||||||||||| || || || || |||||||| | |||||| |||||| ||||| || ||||||||| | || |
|
|
| T |
27696369 |
gacttataggatacaatgccaaagtttctagaaaatacctctggcgcaatgtagcccaaagttcccctagccgtggtcattgacacaatacttctttctt |
27696270 |
T |
|
| Q |
140 |
tcgaacatatcttggccaaaccaaaatctgtaattttgggaatgaaattgtcatctaacaaaacattattaggattgatgtcaaagtgtagaattctttg |
239 |
Q |
| |
|
| ||||| | || |||||||||||||| | ||||||||| |||||||||| |||| ||| || |||| ||| ||||| ||||| || ||||||| || |
|
|
| T |
27696269 |
tggaacaaagttttgccaaaccaaaatcagaaattttgggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaatggagaattcgttt |
27696170 |
T |
|
| Q |
240 |
atcacaaccttggtggagatactcaatgccatttgctatacctagagcaattttttg |
296 |
Q |
| |
|
|||||||||||| || ||||||||||| || || |||||||| |||| ||| ||||| |
|
|
| T |
27696169 |
atcacaaccttgatgaagatactcaattcccttcgctataccaagagaaatgttttg |
27696113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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