View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0592_low_19 (Length: 329)
Name: NF0592_low_19
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0592_low_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 1757208 - 1757521
Alignment:
| Q |
16 |
atagaaagttaaatgtaactatcatgatttaatgatcatcaatgaaaaatatattgcaaatttcctttttgcagagaagaacagaattattagatgagta |
115 |
Q |
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| T |
1757208 |
atagaaagttaaatgtaactatcatgatttaatgatcatcaatgaaaaatatattgcaaatttcctttttgcagagaagaacagaattattggatgagta |
1757307 |
T |
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| Q |
116 |
agtagataaataaagcaaattatttataagtttaaatattaggatttgaaataattgttaagcttgtaagttgataaaaatctaggtctgtaaaatttag |
215 |
Q |
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| T |
1757308 |
agtagataaataaagcaaattatttataagtttaaatattaggatttgaaataattgttaagcttgtaagttgagaaaaatctaggtctgtaaaattcag |
1757407 |
T |
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| Q |
216 |
ggtgtatatcattaaaaataaatgactgatatctcnnnnnnnatagacttatttccaagtcataactaataaaatgtgaaactcnnnnnnnaataaaatg |
315 |
Q |
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| T |
1757408 |
ggtgtatatcattaaaaataaatgactgatatctctttttttatagacttatttccaagtcataactaataaaatgtgaaactctttttttaataaaatg |
1757507 |
T |
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| Q |
316 |
actgttttgtatga |
329 |
Q |
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| T |
1757508 |
actgttttgtatga |
1757521 |
T |
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