View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0592_low_23 (Length: 270)
Name: NF0592_low_23
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0592_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 44684889 - 44685124
Alignment:
| Q |
9 |
gaataatatatgaagatgtgttgaaatattttactcatatcatacaaatattaatttgtgcagttctttagtattgatttatatgatcataagagtataa |
108 |
Q |
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| T |
44684889 |
gaataatatatgaagatgtgttgaaatattttactcatatcatacaaatattaatttgtgcagttctttagtattgatttatatgatcataagagtataa |
44684988 |
T |
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| Q |
109 |
nnnnnnnnn-ctttctctgagttaatgat-gacaaatgtaataagaacctataggaatctcactatttttaagctgtaatgctcctgtacaatgcagcac |
206 |
Q |
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| T |
44684989 |
ttttttttttctttctctgagttaatgatagacaaatgtaataagaacctataggaatctcactatttttaagctgtaatgcccctgtacaatgtagcac |
44685088 |
T |
|
| Q |
207 |
tcatctcagagttatcttctcagggacaaacatatt |
242 |
Q |
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| T |
44685089 |
tcatctcagagttatcttctcagggacaaacatatt |
44685124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 13172244 - 13172317
Alignment:
| Q |
21 |
aagatgtgttgaaatattttactcatatc---atacaaatattaatttgtgcagttctttagtattgatttata |
91 |
Q |
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| T |
13172244 |
aagatgtgtcgagatattttacttatatcttcatacaagtattaatttgtgcagttatttagtattgatttata |
13172317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 13172349 - 13172403
Alignment:
| Q |
120 |
ttctctgagttaatgatgacaaatgtaataagaacctataggaatctcactatttttaag |
179 |
Q |
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| T |
13172349 |
ttctttgagttaatgatgacaagtgtaataagaacct-----aatctcactatttttaag |
13172403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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