View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0592_low_3 (Length: 607)
Name: NF0592_low_3
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0592_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 30 - 329
Target Start/End: Complemental strand, 37147460 - 37147161
Alignment:
| Q |
30 |
taactaactttctagtttacttgctatgcaagtcatcactatcttccttggccgttgcttctatctctattatttgcgtgatgcaatatccccacaagtt |
129 |
Q |
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| T |
37147460 |
taactaactttctagtttacttgctatgcaagtcatcactatcttccttggcccttgcttctatctctattatttgcgtgatgcaatatccccacaagtt |
37147361 |
T |
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| Q |
130 |
ggtggttgataaatgttgatcatccccaacttcttgacggctgaagctggactttgtcgttcacatgtctttcaatggtgggttttaaccggcgacaaat |
229 |
Q |
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| T |
37147360 |
ggtggttgataaatgttgatcatccccaacttcttgacggctgaagctggactttgtcgttcacatgtctttcaatggtgggttttaaccggcgacaaat |
37147261 |
T |
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| Q |
230 |
ctgttggttttaaggtagtnnnnnnnnnnntcaggatttttgttaagaactggataggttctttgatggttaaagctccaggatccggtgaatgttacat |
329 |
Q |
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| T |
37147260 |
ctgttggttttaaggtagtaaaaaaaaaaatcaggatttttgttaagaactgaataggttctttgatggttaaagctccaggatccggtgaatgttacat |
37147161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 332 - 572
Target Start/End: Complemental strand, 37147131 - 37146893
Alignment:
| Q |
332 |
ttgagtagttacgagttgggtttctcatttgtggtcaatgtttctgacttgtgattctattattcctttttagagttgttaagcacatcaagtttcaaag |
431 |
Q |
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| T |
37147131 |
ttgagtagttacgagttgggtttctcattcgtggtcaatgtttctgacttgtgattctcttattcctttttagagttgttaagcacatcaagtttcaaag |
37147032 |
T |
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| Q |
432 |
tttgttttgtcgacgccgcaccggtcccgctgtaacttgtgatatcttgttcattctttatgtttgattgagattgttggactcagaagagtgttctgct |
531 |
Q |
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| T |
37147031 |
tttgttttgtcgacgccgcaccggt-ccgctgtaacttgtgatatcttgttcatt-tttatgtttgattgagattgttggactcagaagagtgttctgct |
37146934 |
T |
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| Q |
532 |
tgctgcgttgtagggcgtttggttcttggtttcgttctgtg |
572 |
Q |
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| T |
37146933 |
tgctgcgttgtagggcgtttggttcttggtttcgttctgtg |
37146893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 441
Target Start/End: Complemental strand, 32040 - 31961
Alignment:
| Q |
362 |
gtggtcaatgtttctgacttgtgattctattattcctttttagagttgttaagcacatcaagtttcaaagtttgttttgt |
441 |
Q |
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| T |
32040 |
gtggtcgatgtgtttgacttttgattctttgattcctttttagagttgttgagcattgctagtttcatagtttgttttgt |
31961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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