View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0592_low_30 (Length: 241)

Name: NF0592_low_30
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0592_low_30
NF0592_low_30
[»] chr5 (7 HSPs)
chr5 (7-241)||(1757719-1757953)
chr5 (139-230)||(29166703-29166794)
chr5 (11-77)||(29166788-29166854)
chr5 (11-79)||(29425109-29425176)
chr5 (133-174)||(29570123-29570164)
chr5 (139-176)||(29568831-29568868)
chr5 (7-50)||(27918459-27918502)
[»] chr4 (5 HSPs)
chr4 (10-143)||(27481807-27481941)
chr4 (7-129)||(27461673-27461805)
chr4 (11-73)||(27521609-27521671)
chr4 (70-128)||(27521694-27521752)
chr4 (178-241)||(27481745-27481808)
[»] chr3 (1 HSPs)
chr3 (15-77)||(25518264-25518326)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-128; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 1757953 - 1757719
Alignment:
Q  7 gaactttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatatataggagatggtatatgatgatttgttgag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1757953 gaactttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatatataggagatggtatatgatgatttgttgag 1757854  T
Q  107 attttcaagggtaactgatttttgtatgtaggatatataagctcaaccacataatcacatcaatctctatgtagagttaaagacttcgaacgtcgaggat 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1757853 attttcaagggtaactgatttttgtatgtaggatatataagctcaaccacataatcacatcaatctctatgtagagttaaagacttcggacgtcgaggat 1757754  T
Q  207 cgaacccacgataactaattctcaccgtaccaatc 241  Q
    |||||||||||||||||||||||||||||||||||    
T  1757753 cgaacccacgataactaattctcaccgtaccaatc 1757719  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 29166794 - 29166703
Alignment:
Q  139 atatataagctcaaccacataatcacatcaatctctatgtagagttaaagacttcgaacgtcgaggatcgaacccacgataactaattctca 230  Q
    ||||||| |||||||||||||||| ||||||||||||| || ||||| |||||||   |||||||||||||||||||||||||||| |||||    
T  29166794 atatataggctcaaccacataatcccatcaatctctatataaagttagagacttcaggcgtcgaggatcgaacccacgataactaactctca 29166703  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 29166854 - 29166788
Alignment:
Q  11 tttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatata 77  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| |||||||||||    
T  29166854 tttggttgtaaagtaagtgtgagtggcaaagagttatgaaaaaagagggaaggttggagtatatata 29166788  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 29425176 - 29425109
Alignment:
Q  11 tttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatatata 79  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||    
T  29425176 tttggttgtaaagtaagtgtgagtggcaaagagttatgaa-aaagagggaaggtttgattatatatata 29425109  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 29570123 - 29570164
Alignment:
Q  133 tgtaggatatataagctcaaccacataatcacatcaatctct 174  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  29570123 tgtaggatatataagctcaaccatataatcacatcaatctct 29570164  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 29568831 - 29568868
Alignment:
Q  139 atatataagctcaaccacataatcacatcaatctctat 176  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  29568831 atatataagctcaaccaaataatcacatcaatctctat 29568868  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 27918502 - 27918459
Alignment:
Q  7 gaactttggttgtaaagtaagtgtgagtcgcaaagagttatgaa 50  Q
    |||||||||||| ||||||||| ||||| |||||||||||||||    
T  27918502 gaactttggttgcaaagtaagtctgagtggcaaagagttatgaa 27918459  T

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Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 27481941 - 27481807
Alignment:
Q  10 ctttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatatatag--gagatggtatatgatgatttgttgaga 107  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||  ||||||||||||||||||||| ||||     
T  27481941 ctttggttgtaaagtaagtgtgagtggcaaagagttatgaaaaaagaggtatggtttgagtatatatataggagagatggtatatgatgatttg-tgagg 27481843  T
Q  108 ttttcaagggtaactgatttttgtatgtaggatata 143  Q
    ||||||||||||||||||||||||| ||||||||||    
T  27481842 ttttcaagggtaactgatttttgtaggtaggatata 27481807  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 27461805 - 27461673
Alignment:
Q  7 gaactttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgag----------tatatatataggagatggtatatgatg 96  Q
    |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||          |||||||||||||||||||||||||||    
T  27461805 gaactttgattgtaaagtaagtgtgagtggcaaagagttatgaaaaaagagggatggtttgagtgtatatatatatatatataggagatggtatatgatg 27461706  T
Q  97 atttgttgagattttcaagggtaactgattttt 129  Q
    || ||||||| ||||||||||||| ||||||||    
T  27461705 atctgttgaggttttcaagggtaattgattttt 27461673  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 27521609 - 27521671
Alignment:
Q  11 tttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtata 73  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  27521609 tttgattgtaaagtaagtgtgagtggcaaagagttatgaaaaaagagggatggtttgagtata 27521671  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 27521694 - 27521752
Alignment:
Q  70 tatatatataggagatggtatatgatgatttgttgagattttcaagggtaactgatttt 128  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  27521694 tatatatataggagatggtatatgatgatctgttgaggttttcaagggtaactgatttt 27521752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 27481808 - 27481745
Alignment:
Q  178 tagagttaaagacttcgaacgtcgaggatcgaacccacgataactaattctcaccgtaccaatc 241  Q
    |||||||| ||||||||| || ||||||||||||||| |||||||||||||||| |||||||||    
T  27481808 tagagttagagacttcgagcgccgaggatcgaacccatgataactaattctcactgtaccaatc 27481745  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 25518326 - 25518264
Alignment:
Q  15 gttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatata 77  Q
    |||||||||||||||||||| |||||||||| |||| ||||||||| ||||||||||||||||    
T  25518326 gttgtaaagtaagtgtgagtggcaaagagttgtgaaaaaagagggaaggtttgagtatatata 25518264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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