View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0592_low_5 (Length: 494)

Name: NF0592_low_5
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0592_low_5
NF0592_low_5
[»] chr5 (11 HSPs)
chr5 (331-465)||(3379876-3380009)
chr5 (12-180)||(3368960-3369125)
chr5 (12-106)||(3402963-3403057)
chr5 (310-387)||(3403224-3403300)
chr5 (310-387)||(3401854-3401930)
chr5 (233-306)||(3377823-3377895)
chr5 (310-387)||(3377933-3378009)
chr5 (7-43)||(3374834-3374870)
chr5 (380-429)||(3369196-3369245)
chr5 (330-387)||(3373740-3373796)
chr5 (380-429)||(3394813-3394862)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 331 - 465
Target Start/End: Original strand, 3379876 - 3380009
Alignment:
Q  331 tgacaagtttatgcaattctgattactcttttccaatggattgatatgtatcaggtaatggcaattacttctcttgcaagggaacaacataagcagaaga 430  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||||  |  |||||||||||||||||||||||||||||||||||||    
T  3379876 tgacaagtttattcaattctaattactcttt-ccaatggattgatatgtgtcaggtaacagtgattacttctcttgcaagggaacaacataagcagaaga 3379974  T
Q  431 atgatccagataaagatactagaaataactcaatt 465  Q
    |||||||||||||| | || ||  |||||||||||    
T  3379975 atgatccagataaacaaacaagccataactcaatt 3380009  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 3368960 - 3369125
Alignment:
Q  12 atgaatgtttctttagcggatctagacggtaatgttgttgccggtcacgtagctggtccattggtggctgcaagtcttgtaactgtaagtacctgtgaag 111  Q
    |||||||||||||| | ||||||||| || ||||||||||  |||| |||||||||||||||||||| |||||||| || | ||||||||||||| |||     
T  3368960 atgaatgtttcttttgtggatctagatggaaatgttgttggtggtcgcgtagctggtccattggtggttgcaagtcctgcagctgtaagtacctgggaaa 3369059  T
Q  112 gaaactatatgtctataaaatcaaatggaatatttaaaggctaataatagcctaataagtttttgacat 180  Q
    | ||  ||| || |||||||||||||  |||||||| ||||   |||||| |||||| |||||||||||    
T  3369060 ggaataataggtttataaaatcaaataaaatatttagaggc---taatagtctaatatgtttttgacat 3369125  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 3402963 - 3403057
Alignment:
Q  12 atgaatgtttctttagcggatctagacggtaatgttgttgccggtcacgtagctggtccattggtggctgcaagtcttgtaactgtaagtacctg 106  Q
    |||| ||||||||| | ||||||| | ||  ||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  3402963 atgagtgtttctttggtggatctacatggacatgttgttggcggtcgcgtagctggtccattggtggctgcaagtcctgtaaatgtaagtacctg 3403057  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 3403224 - 3403300
Alignment:
Q  310 tttgtggtaattagtacacagtgacaagtttatgcaattctgattactcttttccaatggattgatatgtatcaggta 387  Q
    |||||||||||||||||  |||||||||||||||||||| | || |||| ||||||||||||||||||||||||||||    
T  3403224 tttgtggtaattagtactaagtgacaagtttatgcaattatcatcactc-tttccaatggattgatatgtatcaggta 3403300  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 3401854 - 3401930
Alignment:
Q  310 tttgtggtaattagtacacagtgacaagtttatgcaattctgattactcttttccaatggattgatatgtatcaggta 387  Q
    |||||||||| || | | ||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  3401854 tttgtggtaactaattctcagtgacaagtctatgcaattctcattactc-tttccaatggattgatatgtatcaggta 3401930  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 3377823 - 3377895
Alignment:
Q  233 aagtaaagttgatgatctagaaacatattttagtctcctgctaaagaaattggtacaatgtaacaaatgaatgc 306  Q
    |||||||||||||||||||| ||||| | ||||  ||||||||| ||||||||||| |||||||||||| ||||    
T  3377823 aagtaaagttgatgatctagtaacat-tattagggtcctgctaacgaaattggtactatgtaacaaatgtatgc 3377895  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 3377933 - 3378009
Alignment:
Q  310 tttgtggtaattagtacacagtgacaagtttatgcaattctgattactcttttccaatggattgatatgtatcaggta 387  Q
    |||||||||| || | | ||||||||||| ||||||||| |  ||||||||| ||| |||||||||||||||||||||    
T  3377933 tttgtggtaactaattctcagtgacaagtctatgcaattttcgttactcttt-ccagtggattgatatgtatcaggta 3378009  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 3374834 - 3374870
Alignment:
Q  7 gtgagatgaatgtttctttagcggatctagacggtaa 43  Q
    |||| ||||||||||||||||||||||||||||||||    
T  3374834 gtgacatgaatgtttctttagcggatctagacggtaa 3374870  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 429
Target Start/End: Original strand, 3369196 - 3369245
Alignment:
Q  380 atcaggtaatggcaattacttctcttgcaagggaacaacataagcagaag 429  Q
    |||||||||||| | |||||| ||||||||| ||||||||| ||||||||    
T  3369196 atcaggtaatggtagttacttttcttgcaagtgaacaacatgagcagaag 3369245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 3373740 - 3373796
Alignment:
Q  330 gtgacaagtttatgcaattctgattactcttttccaatggattgatatgtatcaggta 387  Q
    ||||||||||||   |||||| | |||||||| |||||||||||||||||||||||||    
T  3373740 gtgacaagtttactgaattctcagtactcttt-ccaatggattgatatgtatcaggta 3373796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 429
Target Start/End: Original strand, 3394813 - 3394862
Alignment:
Q  380 atcaggtaatggcaattacttctcttgcaagggaacaacataagcagaag 429  Q
    |||||||||||| | |||||| ||||||||| ||||||||| ||||||||    
T  3394813 atcaggtaatggtagttacttttcttgcaagtgaacaacatgagcagaag 3394862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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