View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0592_low_7 (Length: 450)
Name: NF0592_low_7
Description: NF0592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0592_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 421
Target Start/End: Original strand, 28597967 - 28598375
Alignment:
| Q |
13 |
aaaatcctcaatatccatggtcacccaatttcctcttccagtcaataaatataacaacaaaatccctattgccttcacatctgatccaacattacattca |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28597967 |
aaaatcctcaatatccatgggcacccaatttcctcttccagtcaataaatataacaacaaaacccctattgccttcacatctgatccaacattacattca |
28598066 |
T |
|
| Q |
113 |
ttattgcactcatgaagaccaaacagtttaatctttgcaacaagattgttgtctaggaggatgttggatggagaaatatgacaatgagtaatgggcctgg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
28598067 |
ttattgcactcatgaagaccaaacagtttgatctttgcaacaagattgttgtctaggaggatgttggatggagaaacatgacaatgagttatgggcctgg |
28598166 |
T |
|
| Q |
213 |
gctgaaatgagtttataaagcccagcccggaacaaacttctatggctatccttatgcaatcttgccagcttatgaacttctttcttgtcttgcaaggtag |
312 |
Q |
| |
|
||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28598167 |
gctgaaatgagcttagaaagcccagcccagaacaaacttctatggctatccttatgcaatcttgccagcttatgaacttctttcttgtcttgcaaggtag |
28598266 |
T |
|
| Q |
313 |
gttttcttccaaactgccattgtgcatgtattccaatactaagcatttgggctcagagcagaatccaagtatagcaaccagatgaggatgtcgaatacta |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28598267 |
gttttcttccaaactgccattgtgcatgtattccaatactaagcatttgggctcagagcagaatccaagtataccaaccagatgaggatgtcgaatacta |
28598366 |
T |
|
| Q |
413 |
ccaagtgac |
421 |
Q |
| |
|
||||||||| |
|
|
| T |
28598367 |
ccaagtgac |
28598375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2294 times since January 2019
Visitors: 3818