View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0593_high_2 (Length: 625)
Name: NF0593_high_2
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 135 - 550
Target Start/End: Original strand, 3698680 - 3699097
Alignment:
| Q |
135 |
tgccgcagcttccattgcaaggaagatctacttgaggggtggactcggtgttggtgcattccagaggatttatggtggaagtcagaggaatggcagtcgc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698680 |
tgccgcagcttccattgcaaggaagatctacttgaggggtggactcggtgttggtgcattccagaggatttatggtggaagtcagaggaatggcagtcgc |
3698779 |
T |
|
| Q |
235 |
ccacctcatttctgcaagagcagtggttccattgctcgccacattcttcaacagctgcagaacatgaaccttattgagatggacaccaaggggtaaataa |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698780 |
ccacctcatttctgcaagagcagtggttccattgctcgccacattcttcaacagttgcagaacatgaaccttattgagatggacaccaaggggtaaataa |
3698879 |
T |
|
| Q |
335 |
ctcattatccttgttagtttgctatagtttgaaatatggttgtta----caatgaagagaatagtaacagtagaattagtctaagccgcaactcaaattg |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698880 |
ctcattatccttgttagtttgctatagtttacaatacggttgttaccagcaatgaagagaatagtaacagtagaattagtctaagccgcaactcaaattg |
3698979 |
T |
|
| Q |
431 |
aaaagctattttaatgttcacttgtagttttttaacaacatttgtttagcagttgttcatgctattatgcatccgtgtgttttatttatattgtgattag |
530 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| | |
|
|
| T |
3698980 |
aaaagctattttaatgttcacttgtaattttttaacaacatttgtttagcagttgttcatgctattctgcatc--tgtgttctatttatattgtgatt-g |
3699076 |
T |
|
| Q |
531 |
gatttgc-ttagaaatagttt |
550 |
Q |
| |
|
| ||||| ||||||||||||| |
|
|
| T |
3699077 |
gctttgctttagaaatagttt |
3699097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 139 - 288
Target Start/End: Original strand, 3703628 - 3703777
Alignment:
| Q |
139 |
gcagcttccattgcaaggaagatctacttgaggggtggactcggtgttggtgcattccagaggatttatggtggaagtcagaggaatggcagtcgcccac |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3703628 |
gcagcttccattgcaaggaagatctacttgaggggtggactcggtgttggtgcattccagaggatttatggtggaagccagaggaatggcagtcgcccac |
3703727 |
T |
|
| Q |
239 |
ctcatttctgcaagagcagtggttccattgctcgccacattcttcaacag |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3703728 |
ctcatttctgcaagagcagtggttccattgctcgccacattcttcaacag |
3703777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 474 - 593
Target Start/End: Original strand, 3703777 - 3703894
Alignment:
| Q |
474 |
gtttagcagttgttcatgctattatgcatccgtgtgttttatttatattgtgattaggatttgcttagaaatagtttctgcatcgtccctttgtatcatg |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3703777 |
gtttagcagttgttcatgctattatgcatccgtgtgttttatttatattgtgattaggatttgcttagaaatagtttctgcatcgtccctttgtatca-- |
3703874 |
T |
|
| Q |
574 |
tgtttttaactttggttttt |
593 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
3703875 |
tgtttttaacattggttttt |
3703894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 3703515 - 3703578
Alignment:
| Q |
23 |
gtggactatgtcagagctggtgagtttcttttttgtgtatgagtgatttgtcaaaacttctgaggaac |
90 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| |
|
|
| T |
3703515 |
gtggactatgtcagagctggtgagtttc----ttgtgtttgagagatttgtcaaaacttctgaggaac |
3703578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 3698574 - 3698631
Alignment:
| Q |
27 |
actatgtcagagctggtgagtttcttttttgtgtatgagtgatttgtcaaaacttctgag |
86 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
3698574 |
actatgtcagagctggtgagtttc--ttttgtgtttgagtgatttgtcaaaacttttgag |
3698631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 3706871 - 3706928
Alignment:
| Q |
263 |
ccattgctcgccacattcttcaacagctgcagaacatgaaccttattgagatggacac |
320 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||||||| || | ||||| |||||||| |
|
|
| T |
3706871 |
ccattgctcgtcacattctccaacagttgcagaacatggacatcattgaaatggacac |
3706928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 140 - 329
Target Start/End: Complemental strand, 15179567 - 15179378
Alignment:
| Q |
140 |
cagcttccattgcaaggaagatctacttgaggggtggactcggtgttggtgcattccagaggatttatggtggaagtcagaggaatggcagtcgcccacc |
239 |
Q |
| |
|
|||||||||| |||||||| |||||| | || || || || ||||||||| |||||||||||||||| ||||| |||||||||||||| ||||| || || |
|
|
| T |
15179567 |
cagcttccatggcaaggaaaatctacgtaagaggcggtcttggtgttggttcattccagaggatttacggtgggagtcagaggaatggaagtcgtcctcc |
15179468 |
T |
|
| Q |
240 |
tcatttctgcaagagcagtggttccattgctcgccacattcttcaacagctgcagaacatgaaccttattgagatggacaccaaggggta |
329 |
Q |
| |
|
||||||||||||||||||||| | |||||||| ||||||||||||||| || ||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
15179467 |
ccatttctgcaagagcagtggtgctattgctcgtcacattcttcaacagttggagaacatgaacctcatcgagatggataccaaggggta |
15179378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 568 times since January 2019
Visitors: 3835