View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_high_22 (Length: 389)
Name: NF0593_high_22
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 30 - 378
Target Start/End: Complemental strand, 9212454 - 9212106
Alignment:
| Q |
30 |
gcatgtagtggttgttgacgcacccatgtcatctcagcttgtcttggtacaaagttggaaaagaaaactataggagctcctcttttcaaaacgttccttg |
129 |
Q |
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| T |
9212454 |
gcatgtagtggttgttgacgcacccatgtcatctcagcttgtcttggtacaaagttggaaaagaaaactacaggagctcctcttttcaaaacgttccttg |
9212355 |
T |
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| Q |
130 |
ggttttcattgataatatggaagtataactctcctgaattttctggtaaatcattttcaaccgagagtaaaagtattttttctggtggaggttcagtggg |
229 |
Q |
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| T |
9212354 |
gtttttcattgataatatggaagtataactctcctgaattttctggtaaatcattttcaaccgagagtaaaagtattttttctggtggaggttcagtggg |
9212255 |
T |
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| Q |
230 |
gagtgaaatagaggctctactaccaaaagttgaattattgaaacacataataatcacaagtagtagcaagaaggatacatggtttgaagtggacattttg |
329 |
Q |
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| T |
9212254 |
gagtgaaatagaggctctactaccaaaagttgaattattgaaacacataataatcacaagtagtagcaacaaagatacatggtttgaagtggacattttg |
9212155 |
T |
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| Q |
330 |
tttgatgatgagaggcttttaagtttcaacaattgttattgatttctct |
378 |
Q |
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| T |
9212154 |
tttgatgatgacaggcttttaagtttcaacaattgctattgatttctct |
9212106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 336
Target Start/End: Original strand, 7250351 - 7250456
Alignment:
| Q |
231 |
agtgaaatagaggctctactaccaaaagttgaattattgaaacacataataatcacaagtagtagcaagaaggatacatggtttgaagtggacattttgt |
330 |
Q |
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|||| ||||||| |||| || ||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||| | ||| | |||||||||| |
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| T |
7250351 |
agtggaatagagactctgctgccaaaagttaaattattgaaacacatagcaatcaaaagtagtaaaaagaaggatacatggatagaaatagacattttgt |
7250450 |
T |
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| Q |
331 |
ttgatg |
336 |
Q |
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|||||| |
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| T |
7250451 |
ttgatg |
7250456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 29252803 - 29252875
Alignment:
| Q |
245 |
tctactaccaaaagttgaattattgaaacacataataatcacaagtagtagcaagaaggatacatggtttgaa |
317 |
Q |
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| T |
29252803 |
tctactgccaaaggttgaattactgaaacacatagcaatcacaagtagtaacaagaaggatacatggattgaa |
29252875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 331
Target Start/End: Original strand, 9892970 - 9893065
Alignment:
| Q |
236 |
aatagaggctctactaccaaaagttgaattattgaaacacataataatcacaagtagtagcaagaaggatacatggtttgaagtggacattttgtt |
331 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| || | |||| ||| ||| ||||| | ||||||||||| |
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| T |
9892970 |
aatagagactctactaccaaaagttgaattattgaaagacataacaatcacaagtaataacgagaaagatttatgaattgaaatagacattttgtt |
9893065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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