View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_high_24 (Length: 383)
Name: NF0593_high_24
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 30 - 374
Target Start/End: Original strand, 4612278 - 4612624
Alignment:
| Q |
30 |
gtttctagtagacatatacatttttaaaactaaaagacaatcatatcgatattttgaaaacatatatgtacattgtacactactagaattactatttacg |
129 |
Q |
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| T |
4612278 |
gtttctagtagacatatacatttttaaaactaaaagacaatcatatcgttattttgaaaacatatatgtacattgtacactactagaattactatttacg |
4612377 |
T |
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| Q |
130 |
caaagtcactaattaatgattactgcaaaagaacaaaa-ccctttgttaaggaacaagactcaattgtggatgtcatgagcacatatatgtttttagcaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4612378 |
caaagtcactaattaatgattactgcaaaagaacaaaaaccctttgttaaggaacaagactcaattgtggatgtcatgagcacatatatgtttttagcaa |
4612477 |
T |
|
| Q |
229 |
gaagacatgaaaatcattagctaactcaattttaaacaaagattcaaatttgaacatttgtcaagaggcattaattcagtga-tttaagtttaacttttt |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4612478 |
gaagacatgaaaatcattagctaactcaattttaaacaaagattcaaatttgaacatttgtcaagaggcattaattcagtgattttaagtttaacttttt |
4612577 |
T |
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| Q |
328 |
aactgttaggataaattaaatcttgtttgaaacagttgtagaataat |
374 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4612578 |
aacttttaggataaattaaatcttgtttgaaacagttgtagaataat |
4612624 |
T |
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