View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0593_high_25 (Length: 383)

Name: NF0593_high_25
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0593_high_25
NF0593_high_25
[»] chr7 (2 HSPs)
chr7 (1-294)||(946319-946597)
chr7 (38-86)||(28145718-28145766)
[»] chr3 (1 HSPs)
chr3 (49-87)||(3028559-3028597)
[»] scaffold1626 (1 HSPs)
scaffold1626 (28-85)||(320-377)
[»] chr2 (1 HSPs)
chr2 (48-85)||(26533840-26533877)
[»] chr1 (3 HSPs)
chr1 (28-85)||(409400-409457)
chr1 (28-63)||(43017041-43017076)
chr1 (47-85)||(427221-427259)
[»] chr5 (1 HSPs)
chr5 (30-78)||(31951915-31951963)
[»] scaffold0312 (1 HSPs)
scaffold0312 (47-85)||(3291-3329)
[»] chr6 (1 HSPs)
chr6 (51-89)||(20796473-20796511)
[»] chr8 (1 HSPs)
chr8 (29-85)||(6873616-6873672)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 946319 - 946597
Alignment:
Q  1 tgatttgaacgaaaggttaaagggccacggttcaaactctggtaaaagagaaaatactaacatgacaactaatatactaacatttccctatnnnnnnnca 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       ||    
T  946319 tgatttgaacgaaaggttaaaggaccacggttcaaactctggtaaaagagaaaatactaacatgagaactaatatactaacatttccctataaaaaaaca 946418  T
Q  101 gattaattatttatcaaattaatgtgaagagaagtatttggtacaaactagctaggtacctagaagaccgagatggaaggaaagaggaatgtgatcatca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||    
T  946419 gattaattatttatcaaattaatgtgaagagaagtatttggta---------------cctagaagaccgagatggaaggaaagaggaatgtgatcatca 946503  T
Q  201 ggctcaatttttcgcaactggtctgttttagtgatgatgctgtattcctcccagccagtaaacccagaaatgtaatcaccagccttgaaatttg 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  946504 ggctcaatttttcgcaactggtctgttttagtgatgatgctgtattcctcccagccagtaaacccagaaatgtaatgaccagccttgaaatttg 946597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 28145766 - 28145718
Alignment:
Q  38 tctggtaaaagagaaaatactaacatgacaactaatatactaacatttc 86  Q
    |||||| || ||||||||||||| ||  |||||||||||||||||||||    
T  28145766 tctggtgaatgagaaaatactaatatagcaactaatatactaacatttc 28145718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 3028597 - 3028559
Alignment:
Q  49 agaaaatactaacatgacaactaatatactaacatttcc 87  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  3028597 agaaaatactaacataacaactaatatactaacatttcc 3028559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1626 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1626
Description:

Target: scaffold1626; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 377 - 320
Alignment:
Q  28 cggttcaaactctggtaaaagagaaaatactaacatgacaactaatatactaacattt 85  Q
    |||||||||||| ||  | ||||||||||||||||| |||||| ||||||||||||||    
T  377 cggttcaaactcaggctacagagaaaatactaacattacaactcatatactaacattt 320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 26533840 - 26533877
Alignment:
Q  48 gagaaaatactaacatgacaactaatatactaacattt 85  Q
    |||||||||||||||| |||||||||||||||||||||    
T  26533840 gagaaaatactaacataacaactaatatactaacattt 26533877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 409400 - 409457
Alignment:
Q  28 cggttcaaactctggtaaaagagaaaatactaacatgacaactaatatactaacattt 85  Q
    |||||||||||| ||  | ||||||||||||||||| |||||| ||||||||||||||    
T  409400 cggttcaaactcaggctacagagaaaatactaacattacaactcatatactaacattt 409457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 43017076 - 43017041
Alignment:
Q  28 cggttcaaactctggtaaaagagaaaatactaacat 63  Q
    |||||||||| |||||||||||||||||||||||||    
T  43017076 cggttcaaaccctggtaaaagagaaaatactaacat 43017041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 427221 - 427259
Alignment:
Q  47 agagaaaatactaacatgacaactaatatactaacattt 85  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  427221 agagaaaatactaacataacaactaatataccaacattt 427259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 31951915 - 31951963
Alignment:
Q  30 gttcaaactctggtaaaagagaaaatactaacatgacaactaatatact 78  Q
    |||||||| || || ||||||||||||||||||| ||||||||||||||    
T  31951915 gttcaaaccctagtgaaagagaaaatactaacataacaactaatatact 31951963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 3329 - 3291
Alignment:
Q  47 agagaaaatactaacatgacaactaatatactaacattt 85  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  3329 agagaaaatactaacataacaactaatataccaacattt 3291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 20796511 - 20796473
Alignment:
Q  51 aaaatactaacatgacaactaatatactaacatttccct 89  Q
    |||||||||| || |||||||||||||||||||||||||    
T  20796511 aaaatactaatataacaactaatatactaacatttccct 20796473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 6873616 - 6873672
Alignment:
Q  29 ggttcaaactctggtaaaagagaaaatactaacatgacaactaatatactaacattt 85  Q
    |||| |||||| |||||| ||| |||||||||| | |||||||||||||||| ||||    
T  6873616 ggttaaaactcaggtaaaggaggaaatactaacgtaacaactaatatactaatattt 6873672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 233 times since January 2019
Visitors: 3833