View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_high_3 (Length: 576)
Name: NF0593_high_3
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 13 - 541
Target Start/End: Complemental strand, 24779467 - 24778937
Alignment:
| Q |
13 |
aatatggcgaagatgttgaagtgtgctggtaatgatgatatcattaccattaaggctgatgatgggagtgatactgttaccttcatgtttgaaagcccta |
112 |
Q |
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| T |
24779467 |
aatatggcgaagatgttgaagtgtgctggtaatgatgatatcattactattaaggctgatgatgggagtgatactgttaccttcatgtttgaaagcccta |
24779368 |
T |
|
| Q |
113 |
gtaagtttcgttttctttaccaattctgtagttttagtgttaattagggttttaattgggttaattagggttttgggttcattgttgtatgattatttcg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24779367 |
gtaagtttcgttttctttaccaattctgtagttttagtgttaattagggttttaattgggttaattagggttttgggttcattgttgtatgattatttcg |
24779268 |
T |
|
| Q |
213 |
tgctaattgggttttgggttttaattgggttaatttgaaatcttagggttttgtgttaattgattgaatactaatttcgtgctgttttgggtttagggct |
312 |
Q |
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| T |
24779267 |
tgctaattgggttttgggttttaattgggttaatttgaaatcttagggtttagtgttaattgattgaatactaatttcgtgctgttttgggtttagggct |
24779168 |
T |
|
| Q |
313 |
tggtgttcaatgttaattctttgtgggattgagttaattgattgaatctttagtttctgtttgattttagtttgaaacctatataagggtctttttaatg |
412 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24779167 |
tggtattcaatgttaattctttgtgggattgagttaattgattgaatctttagtttctgtttgattttagtttgaaacctatataagggtctttttaatg |
24779068 |
T |
|
| Q |
413 |
ggtttagtgttgaaatatcacgtctg--atttattttcttgatattggagtagtttttcttatttctcatttgtaaaaatgttcttgtaactgttcttta |
510 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24779067 |
ggtttagtgttgaaatatcacgtctgatatttattttcttgatattggagtagtttttcttatttctcatttgtaaaaatgttcttgtaactgttcttta |
24778968 |
T |
|
| Q |
511 |
agattttagaagcttgtatgctgagcaggga |
541 |
Q |
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| T |
24778967 |
agattttagaagcttgtatgctgagcaggga |
24778937 |
T |
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