View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_high_7 (Length: 540)
Name: NF0593_high_7
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 257 - 511
Target Start/End: Original strand, 42269884 - 42270134
Alignment:
| Q |
257 |
ctcatttaatttaactattaattaaagatcaaatatacttgtatatgcctaattattgaatctctctttagtatgataatggtctttcctcctcctgctg |
356 |
Q |
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| T |
42269884 |
ctcatttaatttaactattaattaaagatcaaatatacttgtatatgcctaattgttgaatctctctttagtatgataatggtctttcctcctcctgctg |
42269983 |
T |
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| Q |
357 |
ggaagacccttgtacgggatcgacaactcttaagcttaggaactcataaactctttagagtgaatcacaatgctgatatatatgtagaaaatatttgcaa |
456 |
Q |
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| T |
42269984 |
ggaagacccttgtacgggatcgacaactcttaagcttaggaactcataaactctttagagtgaatcacaatgctg----atatgtagaaaatatttgcaa |
42270079 |
T |
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| Q |
457 |
agtaaaattcattcttaaataattatccacctaaataaatttattatgttgtatg |
511 |
Q |
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| T |
42270080 |
agtaaaattcattcttaaataattatccacctaaataaatttattatgttgtatg |
42270134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 42269631 - 42269853
Alignment:
| Q |
12 |
agagagaaataaaaagttaattcgttgatgcacttttggtaaataatattaagtcattataagttttggaatgacggtgaatagnnnnnnnaactcattt |
111 |
Q |
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| T |
42269631 |
agagagaaataaaaagttaattcgttgttgcacttttggtaaataatattaagtcattataagttttggaatgacagtgaatggtttttttaactcactt |
42269730 |
T |
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| Q |
112 |
gagttggtctaataatgttgacttgaaactttcaaatgtgtttatctcaatgtatcaactatcaagttcgctcatatatgtcaatttaagtggactaatt |
211 |
Q |
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| T |
42269731 |
gagttggtctaataatgttgacttgaaactttaaagtgtgtttatctcaatgtatcaactatcaagttcgctcatatatgtcaatttaagtggactaatt |
42269830 |
T |
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| Q |
212 |
tgtcttattaaaaaagtaaatag |
234 |
Q |
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| T |
42269831 |
tatcttattaaaaaagtaaatag |
42269853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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