View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0593_low_10 (Length: 535)

Name: NF0593_low_10
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0593_low_10
NF0593_low_10
[»] chr8 (29 HSPs)
chr8 (179-523)||(5842516-5842860)
chr8 (180-523)||(5849226-5849576)
chr8 (323-535)||(5886802-5887021)
chr8 (60-165)||(5984606-5984711)
chr8 (60-165)||(5887214-5887319)
chr8 (60-165)||(5949078-5949183)
chr8 (62-164)||(5960344-5960446)
chr8 (60-164)||(5921187-5921291)
chr8 (60-165)||(5849817-5849922)
chr8 (60-165)||(5843075-5843180)
chr8 (371-523)||(5948163-5948316)
chr8 (388-529)||(5983770-5983911)
chr8 (368-529)||(5920586-5920747)
chr8 (388-529)||(5959252-5959393)
chr8 (199-264)||(17775348-17775413)
chr8 (210-267)||(37172153-37172210)
chr8 (64-137)||(39916637-39916710)
chr8 (179-226)||(42768265-42768312)
chr8 (208-267)||(44061808-44061867)
chr8 (182-228)||(6511822-6511868)
chr8 (199-257)||(32954922-32954980)
chr8 (196-250)||(39211120-39211174)
chr8 (199-261)||(44090968-44091030)
chr8 (199-264)||(3946322-3946387)
chr8 (179-259)||(33605011-33605089)
chr8 (187-228)||(43632299-43632340)
chr8 (199-267)||(12241154-12241222)
chr8 (181-245)||(34694843-34694907)
chr8 (179-228)||(37133823-37133874)
[»] chr2 (15 HSPs)
chr2 (60-145)||(42788976-42789061)
chr2 (389-501)||(42788723-42788835)
chr2 (199-267)||(44239118-44239186)
chr2 (199-264)||(6511481-6511546)
chr2 (179-223)||(6336312-6336356)
chr2 (179-259)||(38821426-38821506)
chr2 (196-264)||(40443128-40443196)
chr2 (199-259)||(44018322-44018382)
chr2 (208-258)||(1079053-1079103)
chr2 (64-94)||(27172818-27172848)
chr2 (182-257)||(31548371-31548448)
chr2 (199-264)||(6646905-6646970)
chr2 (199-264)||(31578516-31578581)
chr2 (199-264)||(37316739-37316804)
chr2 (208-264)||(40504317-40504373)
[»] chr4 (15 HSPs)
chr4 (196-257)||(7209363-7209424)
chr4 (199-266)||(149407-149474)
chr4 (199-264)||(52204932-52204997)
chr4 (179-228)||(2575751-2575800)
chr4 (203-264)||(18316023-18316084)
chr4 (179-228)||(24045304-24045353)
chr4 (182-223)||(44539798-44539839)
chr4 (199-267)||(29227164-29227232)
chr4 (179-228)||(29175286-29175335)
chr4 (199-264)||(38519875-38519940)
chr4 (179-228)||(53801720-53801769)
chr4 (196-264)||(36130277-36130345)
chr4 (179-228)||(42853636-42853687)
chr4 (64-116)||(43560551-43560603)
chr4 (192-228)||(47015080-47015116)
[»] chr7 (16 HSPs)
chr7 (60-119)||(45676080-45676139)
chr7 (179-259)||(49128910-49128992)
chr7 (208-267)||(33845133-33845192)
chr7 (179-250)||(41650767-41650838)
chr7 (209-264)||(49103513-49103568)
chr7 (199-261)||(28249497-28249559)
chr7 (64-110)||(48892630-48892676)
chr7 (199-264)||(37352192-37352257)
chr7 (184-228)||(1284480-1284524)
chr7 (190-226)||(22605430-22605466)
chr7 (179-228)||(27568077-27568128)
chr7 (199-267)||(31711858-31711926)
chr7 (184-228)||(38259128-38259172)
chr7 (211-267)||(43807734-43807790)
chr7 (184-228)||(44649289-44649333)
chr7 (179-228)||(48062116-48062167)
[»] chr3 (19 HSPs)
chr3 (64-114)||(44674039-44674089)
chr3 (199-267)||(48346908-48346976)
chr3 (64-119)||(34626700-34626755)
chr3 (203-264)||(4494161-4494222)
chr3 (179-228)||(32587758-32587807)
chr3 (183-228)||(35299835-35299880)
chr3 (179-259)||(1340111-1340191)
chr3 (199-259)||(10811217-10811277)
chr3 (188-259)||(27089902-27089973)
chr3 (422-465)||(34626445-34626488)
chr3 (179-226)||(13735188-13735237)
chr3 (203-261)||(34307468-34307526)
chr3 (179-228)||(44413883-44413932)
chr3 (199-228)||(55151678-55151707)
chr3 (199-255)||(8502824-8502880)
chr3 (179-264)||(9753278-9753365)
chr3 (199-267)||(39713958-39714026)
chr3 (179-228)||(50876323-50876374)
chr3 (199-267)||(54260125-54260193)
[»] chr6 (7 HSPs)
chr6 (211-267)||(21418279-21418335)
chr6 (211-267)||(21467964-21468020)
chr6 (179-258)||(2241955-2242033)
chr6 (179-251)||(34850696-34850770)
chr6 (180-259)||(3772416-3772497)
chr6 (199-261)||(14910258-14910320)
chr6 (179-228)||(26595408-26595459)
[»] chr1 (11 HSPs)
chr1 (190-264)||(47990254-47990328)
chr1 (215-267)||(45008085-45008137)
chr1 (64-114)||(16127411-16127461)
chr1 (211-264)||(611560-611613)
chr1 (179-261)||(19442571-19442655)
chr1 (67-120)||(37962871-37962924)
chr1 (199-267)||(4857992-4858060)
chr1 (190-226)||(8350161-8350197)
chr1 (179-228)||(9566921-9566972)
chr1 (179-223)||(29359698-29359742)
chr1 (199-267)||(40439761-40439829)
[»] chr5 (15 HSPs)
chr5 (179-228)||(3564599-3564648)
chr5 (179-224)||(6596392-6596437)
chr5 (208-261)||(20478459-20478512)
chr5 (199-264)||(36562977-36563042)
chr5 (179-223)||(9168132-9168176)
chr5 (179-264)||(29463055-29463142)
chr5 (199-267)||(39195826-39195894)
chr5 (197-256)||(14011395-14011454)
chr5 (64-114)||(1281333-1281383)
chr5 (182-228)||(13375630-13375676)
chr5 (191-256)||(54774-54839)
chr5 (179-228)||(7552928-7552977)
chr5 (199-264)||(8920160-8920225)
chr5 (180-250)||(31683434-31683506)
chr5 (184-228)||(19844271-19844315)
[»] scaffold0343 (1 HSPs)
scaffold0343 (199-259)||(8921-8981)
[»] scaffold0618 (1 HSPs)
scaffold0618 (199-261)||(8880-8942)
[»] scaffold0085 (1 HSPs)
scaffold0085 (203-261)||(22781-22839)
[»] scaffold0013 (1 HSPs)
scaffold0013 (179-245)||(90019-90085)
[»] scaffold0662 (1 HSPs)
scaffold0662 (192-228)||(1219-1255)


Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 179 - 523
Target Start/End: Complemental strand, 5842860 - 5842516
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaattttcagattgtt 278  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  5842860 ctcatattatatttttattttctctctagtgttttggtttttgtgtcaatgcttaaacttctttatatattttggttgtccaacaagttttcaggttgtt 5842761  T
Q  279 cgaataacatttctctaatctttaatatgtataagaaaacctagaatgacacttattttaaaacggaaggtgttgtgtattcattttccctcaacaaggt 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5842760 cgaataacatttctctaatctttaatatgtataagaaaacctagaatgacacttattttaaaacggaaggtgttgtgtattcattttccctcaacaaggt 5842661  T
Q  379 ttaaacttgtttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaa 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5842660 ttaaacttgtttggacagatgggcacaaattgccaagtacttgccaggaagaaccgataatgaggtgaaaaacttttggaattcaagcataaagaaaaaa 5842561  T
Q  479 ctcctttctgatgatattgttccatccttcaccccattttatgat 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5842560 ctcctttctgatgatattgttccatccttcaccccattttatgat 5842516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 180 - 523
Target Start/End: Complemental strand, 5849576 - 5849226
Alignment:
Q  180 tcatattatgtttttattttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaattttcagattgttc 279  Q
    ||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||| ||||||    
T  5849576 tcatattatatttttactttctctctactgcgttggtttttgtgtcaatgcttaaacttctttgtatattttgattgtccaataagttgtcaggttgttc 5849477  T
Q  280 gaataacatttctctaatctttaatatgtataagaaaacctagaatgacacttatt-------ttaaaacggaaggtgttgtgtattcattttccctcaa 372  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||||    
T  5849476 gaataacatttctttaatctttaatatgtataagaaaacctagaatgacacttgttctaatctttaaaacggaaggtgttgtgtattcattttccctcaa 5849377  T
Q  373 caaggtttaaacttgtttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaag 472  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5849376 caaggtttaaacttgtttggacagatgggcacaaattaccaagcacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaag 5849277  T
Q  473 aaaaaactcctttctgatgatattgttccatccttcaccccattttatgat 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5849276 aaaaaactcctttctgatgatattgttccatccttcaccccattttatgat 5849226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 323 - 535
Target Start/End: Complemental strand, 5887021 - 5886802
Alignment:
Q  323 aatgacacttattttaaaacggaaggtgttgtgtattcatttt-ccctcaacaaggtttaaact---tg---tttggacagatgggcacaaattgccaag 415  Q
    ||||||||||||||||||||||||||    || || ||||||| ||||||||||| ||| ||||   ||   |||||||||||||||||||||||| |||    
T  5887021 aatgacacttattttaaaacggaagggacggtctactcatttttccctcaacaagatttgaactgtttggactttggacagatgggcacaaattgctaag 5886922  T
Q  416 tacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttctgatgatattgttccatccttcaccccat 515  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||| ||||||||||    
T  5886921 cacttaccaggaagaacggataatgaggtgaaaaacttttggaattcaagcatgaagaaaaaactcatttcttatgataatgttccatctttcaccccat 5886822  T
Q  516 tttatgatattcacctcccc 535  Q
    |||||||||||||| |||||    
T  5886821 tttatgatattcacatcccc 5886802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 5984711 - 5984606
Alignment:
Q  60 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5984711 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 5984612  T
Q  160 gaacta 165  Q
    ||||||    
T  5984611 gaacta 5984606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 5887319 - 5887214
Alignment:
Q  60 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 159  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887319 gcagagatgcggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 5887220  T
Q  160 gaacta 165  Q
    ||||||    
T  5887219 gaacta 5887214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 5949183 - 5949078
Alignment:
Q  60 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 159  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5949183 gcagagatgtggaaagagttgaagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 5949084  T
Q  160 gaacta 165  Q
    ||||||    
T  5949083 gaacta 5949078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 5960446 - 5960344
Alignment:
Q  62 agagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtaga 161  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5960446 agagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcaacaagaagtagcactcattgtaga 5960347  T
Q  162 act 164  Q
    |||    
T  5960346 act 5960344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 5921291 - 5921187
Alignment:
Q  60 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||    
T  5921291 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattcta 5921192  T
Q  160 gaact 164  Q
    |||||    
T  5921191 gaact 5921187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 5849922 - 5849817
Alignment:
Q  60 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 159  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||    
T  5849922 gcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctcttatgaagaagtagcaatcattata 5849823  T
Q  160 gaacta 165  Q
    ||||||    
T  5849822 gaacta 5849817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 5843180 - 5843075
Alignment:
Q  60 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgta 159  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||| ||||| ||    
T  5843180 gcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttaaaacgtggaagtttctcttatgaagaagtagcaatcattata 5843081  T
Q  160 gaacta 165  Q
    ||||||    
T  5843080 gaacta 5843075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 371 - 523
Target Start/End: Complemental strand, 5948316 - 5948163
Alignment:
Q  371 aacaaggtttaaacttgttt-ggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcata 469  Q
    |||||| |||| |||||||| |||||||||||| |||||||| ||| |||| || |||||||| ||||||||| | ||||||||||||||||||| ||||    
T  5948316 aacaagatttacacttgttttggacagatgggctcaaattgcaaagcacttacctggaagaacagataatgagataaaaaacttttggaattcaaccata 5948217  T
Q  470 aagaaaaaactcctttctgatgatattgttccatccttcaccccattttatgat 523  Q
    ||||||||| |||||||| ||| |||| ||||||| |||||| |||||| ||||    
T  5948216 aagaaaaaaatcctttctcatggtattattccatctttcaccacattttctgat 5948163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 388 - 529
Target Start/End: Complemental strand, 5983911 - 5983770
Alignment:
Q  388 tttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttct 487  Q
    ||||||||||||||| || ||||| ||  |||| || |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||||| |    
T  5983911 tttggacagatgggctcagattgcaaaacacttacctggaagaacagataatgaggtgaaaaacttttggaattcaaccataaagaagaaaatcctttgt 5983812  T
Q  488 gatgatattgttccatccttcaccccattttatgatattcac 529  Q
     |||||||| ||||||| |||||| |||||| ||| ||||||    
T  5983811 catgatattattccatctttcaccacattttctgaaattcac 5983770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 368 - 529
Target Start/End: Complemental strand, 5920747 - 5920586
Alignment:
Q  368 ctcaacaaggtttaaacttgtttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagca 467  Q
    ||||| ||| |||||| |||||||||||| ||||| || ||||| ||| |||| || |||||||| ||||||||||||||||||||||||||||||| ||    
T  5920747 ctcaaaaagatttaaatttgtttggacaggtgggctcagattgcgaagcacttacctggaagaacagataatgaggtgaaaaacttttggaattcaacca 5920648  T
Q  468 taaagaaaaaactcctttctgatgatattgttccatccttcaccccattttatgatattcac 529  Q
    | ||||| ||| ||| |||| ||| |||  ||||||| ||| || |||||| | ||||||||    
T  5920647 tgaagaagaaaatcccttctcatggtatctttccatctttccccacattttctaatattcac 5920586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 388 - 529
Target Start/End: Complemental strand, 5959393 - 5959252
Alignment:
Q  388 tttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttct 487  Q
    ||||||||||||||| || ||||| ||  ||||  | |||||||| ||||||||||||||||||||||||||||| | ||||||||| ||| | | ||||    
T  5959393 tttggacagatgggctcagattgcaaaacacttaactggaagaacagataatgaggtgaaaaacttttggaattctaccataaagaagaaaattcattct 5959294  T
Q  488 gatgatattgttccatccttcaccccattttatgatattcac 529  Q
     | ||||||  |||||| |||| | |||||| |||| |||||    
T  5959293 cacgatattactccatctttcatcacattttctgatgttcac 5959252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 17775413 - 17775348
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||||||||||||||||||||||||||||    || | ||||||||||||||| ||||||| ||||    
T  17775413 tctctctagtgctttggtttttgtgtcaagatctatatttctttgtatattttagttgtcctacaa 17775348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 37172153 - 37172210
Alignment:
Q  210 ctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    ||||| ||||||||||| | | |||| ||||||||||| |||||||||||||||||||    
T  37172153 ctttgatttttgtgtcattacctaaatttctttgtataatttggttgtccaacaaatt 37172210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 39916637 - 39916710
Alignment:
Q  64 agatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctca 137  Q
    ||||||||||| || |||||||| |||||||| |||||||| ||||||||| | || ||||||| |||| ||||    
T  39916637 agatgtggaaaaagctgcagattgagatggatcaattatctcagacctgatcttaagcgtggaaatttcactca 39916710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 42768265 - 42768312
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtca 226  Q
    |||| ||||| |||||| |||||||||| |||||||||||||||||||    
T  42768265 ctcacattatttttttactttctctctattgctttggtttttgtgtca 42768312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 44061808 - 44061867
Alignment:
Q  208 tgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    ||||||| ||||||||||| |   |||| ||||||||||| |||||||||||||||||||    
T  44061808 tgctttgatttttgtgtcactatctaaatttctttgtataatttggttgtccaacaaatt 44061867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 6511868 - 6511822
Alignment:
Q  182 atattatgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    ||||||||||||||||||||||||| |  ||| ||||||||||||||    
T  6511868 atattatgtttttattttctctctattattttagtttttgtgtcaat 6511822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 32954922 - 32954980
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgt 257  Q
    |||||||| ||||||||||||||||||||  || | | |||||| ||||||||||||||    
T  32954922 tctctctattgctttggtttttgtgtcaagactcacatttctttctatattttggttgt 32954980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 39211120 - 39211174
Alignment:
Q  196 ttttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattt 250  Q
    ||||||||||| || |||||||||||||||||| || | | ||||||||||||||    
T  39211120 ttttctctctattgttttggtttttgtgtcaatactcatatttctttgtatattt 39211174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 44090968 - 44091030
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaa 261  Q
    |||||||| ||||||| ||||||||||| | | |||| ||||||||||| | |||||||||||    
T  44090968 tctctctattgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtccaa 44091030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 3946322 - 3946387
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||||||| |||||||||||||||| |||  || | | |||||| |||||||||||||||| ||||    
T  3946322 tctctctattgctttggtttttgtgccaagactcacatttctttctatattttggttgtcccacaa 3946387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 33605089 - 33605011
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtcc 259  Q
    |||| ||| |||||||| | |||||||| ||||||||| ||||||||||| ||   | |||||||||||||| ||||||||    
T  33605089 ctcacattgtgtttttactctctctctattgctttggtatttgtgtcaatact--catttctttgtatatttaggttgtcc 33605011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 43632340 - 43632299
Alignment:
Q  187 atgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    ||||||||| || ||||||| |||||||||||||||||||||    
T  43632340 atgtttttacttcctctctattgctttggtttttgtgtcaat 43632299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 12241154 - 12241222
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    |||||||| ||||||| ||||| ||||| |   |||| ||||||||||| | |||||||||||||||||    
T  12241154 tctctctattgctttgatttttatgtcactatctaaatttctttgtataatgtggttgtccaacaaatt 12241222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 34694843 - 34694907
Alignment:
Q  181 catattatgtttttattttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgta 245  Q
    ||||||||||||||| |||||||||| ||||||| ||||  ||||||| | |||  |||||||||    
T  34694843 catattatgtttttaatttctctctattgctttgattttcatgtcaatacctaattttctttgta 34694907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 37133874 - 37133823
Alignment:
Q  179 ctcatattatgtttttattttctc--tctagtgctttggtttttgtgtcaat 228  Q
    ||||||||||||||||| ||||||  |||| ||||||| |||||||||||||    
T  37133874 ctcatattatgtttttactttctctttctattgctttgatttttgtgtcaat 37133823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 42789061 - 42788976
Alignment:
Q  60 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaag 145  Q
    ||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||    
T  42789061 gcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaag 42788976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 389 - 501
Target Start/End: Complemental strand, 42788835 - 42788723
Alignment:
Q  389 ttggacagatgggcacaaattgccaagtacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttctg 488  Q
    |||||||| ||||| || || || ||| | || ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||||      
T  42788835 ttggacaggtgggctcagatagcaaagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaagaagaaactactttcac 42788736  T
Q  489 atgatattgttcc 501  Q
    ||||| |||||||    
T  42788735 atgattttgttcc 42788723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 44239118 - 44239186
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    |||||||| ||||||| ||||||||||| ||| |||| ||||||||||| ||| ||||||||| |||||    
T  44239118 tctctctattgctttgatttttgtgtcactgcctaaatttctttgtataatttagttgtccaaaaaatt 44239186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 6511546 - 6511481
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||||||| ||||||||||||||||||||  || | | |||||| |||||||||||||||| ||||    
T  6511546 tctctctattgctttggtttttgtgtcaagactcacatttctttctatattttggttgtcccacaa 6511481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 6336312 - 6336356
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtg 223  Q
    |||||||||| |||||||||||||||||  |||||||||||||||    
T  6336312 ctcatattatatttttattttctctctatcgctttggtttttgtg 6336356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 38821426 - 38821506
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtcc 259  Q
    |||| ||| ||||||||  ||||||||| ||||||||| |||||| |||| || | | |||||||||||||| ||||||||    
T  38821426 ctcacattgtgtttttaccttctctctattgctttggtatttgtgccaatactcatatttctttgtatatttaggttgtcc 38821506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 40443128 - 40443196
Alignment:
Q  196 ttttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||||| |||| |||||||||||||||||| || || | | |||||| |||||||||||||||| ||||    
T  40443128 ttttctttctattgctttggtttttgtgtcgatactaacatttctttatatattttggttgtcccacaa 40443196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 44018322 - 44018382
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtcc 259  Q
    |||||||| ||||||||||||||||||||  | || | |||| ||||||||||||||||||    
T  44018322 tctctctattgctttggtttttgtgtcaaaacatacatttctatgtatattttggttgtcc 44018382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 1079103 - 1079053
Alignment:
Q  208 tgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtc 258  Q
    ||||||| ||||||||||| |||||||| ||||||||||| ||| ||||||    
T  1079103 tgctttgatttttgtgtcactgcttaaatttctttgtataatttagttgtc 1079053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 94
Target Start/End: Complemental strand, 27172848 - 27172818
Alignment:
Q  64 agatgtggaaagagttgcagattaagatgga 94  Q
    |||||||||||||||||||||||||||||||    
T  27172848 agatgtggaaagagttgcagattaagatgga 27172818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 31548371 - 31548448
Alignment:
Q  182 atattatgtttttattttctctct--agtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgt 257  Q
    |||||||||||||| |||||||||  | |||||||| |||||| ||||| || | | |||||||||||||| ||||||    
T  31548371 atattatgtttttactttctctctctattgctttggattttgtatcaatactcatatttctttgtatatttaggttgt 31548448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 6646905 - 6646970
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||||||| |||||||||||||||| |||  || | | |||||| |||||||||||||||| ||||    
T  6646905 tctctctattgctttggtttttgtgccaagactcacatttctttctatattttggttgtcccacaa 6646970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 31578516 - 31578581
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||||||| ||||||| ||||||||||| | | |||| |||||||||||  || ||||||||||||    
T  31578516 tctctctattgctttgatttttgtgtcactacctaaatttctttgtataagttagttgtccaacaa 31578581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 37316804 - 37316739
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||||||| ||||||| | ||||||||| | | |||| ||||||||||| | ||||||||||||||    
T  37316804 tctctctattgctttgatatttgtgtcactacctaaatttctttgtataatgtggttgtccaacaa 37316739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 40504317 - 40504373
Alignment:
Q  208 tgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    ||||||| ||||||||||||| || | | |||||| |||||||||||||||| ||||    
T  40504317 tgctttgatttttgtgtcaatactaacatttctttatatattttggttgtcccacaa 40504373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 7209363 - 7209424
Alignment:
Q  196 ttttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgt 257  Q
    |||||||||||||||||||||||||||| |||  |||| | |||||||||||||||||||||    
T  7209363 ttttctctctagtgctttggtttttgtggcaaaacttacatttctttgtatattttggttgt 7209424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 149474 - 149407
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaat 266  Q
    |||||||| |||||| |||||||||||| | | |||| ||||||||||||||| ||||||||||||||    
T  149474 tctctctattgctttagtttttgtgtcactacctaaatttctttgtatattttagttgtccaacaaat 149407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 52204932 - 52204997
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||||||| ||||||| ||||||||||| | |||||| |||||| |||| ||||||||||||||||    
T  52204932 tctctctattgctttgatttttgtgtcactacttaaatttctttttataatttggttgtccaacaa 52204997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 2575800 - 2575751
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    ||||||||||||| ||| |||||||||| ||||||||||| |||||||||    
T  2575800 ctcatattatgttgttactttctctctattgctttggtttgtgtgtcaat 2575751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 18316023 - 18316084
Alignment:
Q  203 tctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||| ||||||| ||||||||||| | | |||| ||||||||||| ||||||||||||||||    
T  18316023 tctattgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaa 18316084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 24045304 - 24045353
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    |||| |||||||||||| |||||||||| ||||||| |||||||||||||    
T  24045304 ctcacattatgtttttactttctctctattgctttgatttttgtgtcaat 24045353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 44539798 - 44539839
Alignment:
Q  182 atattatgtttttattttctctctagtgctttggtttttgtg 223  Q
    ||||||| ||||||||||||||||| ||||||||||||||||    
T  44539798 atattatctttttattttctctctattgctttggtttttgtg 44539839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 29227232 - 29227164
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    |||||||| ||||||| | ||||||||| | | |||| ||||||||||| | |||||||||||||||||    
T  29227232 tctctctattgctttgatatttgtgtcactacctaaatttctttgtataatatggttgtccaacaaatt 29227164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 29175286 - 29175335
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    |||| ||||| |||||| |||||||||  |||||||||||||||||||||    
T  29175286 ctcacattatctttttactttctctctcttgctttggtttttgtgtcaat 29175335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 38519875 - 38519940
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||||||| ||||||| |||||||| || |  ||||| ||||||||| | ||||||||||||||||    
T  38519875 tctctctattgctttgatttttgtgccactatttaaatttctttgtaaaatttggttgtccaacaa 38519940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 53801769 - 53801720
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    |||| ||||| |||||| |||||||||| |||||| ||||||||||||||    
T  53801769 ctcacattatctttttactttctctctattgctttagtttttgtgtcaat 53801720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 36130345 - 36130277
Alignment:
Q  196 ttttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    ||||||||||| ||| ||| ||||||||||| | | |||| ||||||||||| | || |||||||||||    
T  36130345 ttttctctctattgccttgatttttgtgtcattacctaaatttctttgtataatgtgattgtccaacaa 36130277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 42853636 - 42853687
Alignment:
Q  179 ctcatattatgtttttattttctctct--agtgctttggtttttgtgtcaat 228  Q
    ||||||||||||||| | |||||||||  | |||||||||||||||||||||    
T  42853636 ctcatattatgttttcactttctctctctattgctttggtttttgtgtcaat 42853687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 43560603 - 43560551
Alignment:
Q  64 agatgtggaaagagttgcagattaagatggataaattatctaagacctgattt 116  Q
    ||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||    
T  43560603 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 43560551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 47015080 - 47015116
Alignment:
Q  192 tttattttctctctagtgctttggtttttgtgtcaat 228  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  47015080 tttattttctctctattgctttggtttttgtgccaat 47015116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 45676139 - 45676080
Alignment:
Q  60 gcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 119  Q
    |||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||    
T  45676139 gcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 45676080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 49128992 - 49128910
Alignment:
Q  179 ctcatattatgtttttattttctctct--agtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtcc 259  Q
    |||| ||| |||||||| |||||||||  | ||||||| ||||||||| ||||| || | |||||||||||||||||||||||    
T  49128992 ctcacattgtgtttttactttctctctttactgctttgatttttgtgttaatgcctatatttctttgtatattttggttgtcc 49128910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 33845133 - 33845192
Alignment:
Q  208 tgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    ||||||| ||||||||||| | | |||| ||||||||||| | |||||||||||||||||    
T  33845133 tgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtccaacaaatt 33845192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 41650767 - 41650838
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattt 250  Q
    |||| ||| |||||||| |||||||||| || |||||||||||||||||| || |   ||||||||||||||    
T  41650767 ctcacattttgtttttactttctctctattgttttggtttttgtgtcaatactcatgtttctttgtatattt 41650838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 49103568 - 49103513
Alignment:
Q  209 gctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||||||||||||||||||  | || | ||||||||||||||||||||||| ||||    
T  49103568 gctttggtttttgtgtcaagacatacatttctttgtatattttggttgtcccacaa 49103513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 28249559 - 28249497
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaa 261  Q
    |||||||  ||||||| ||||||||||| | |||||| ||||||||||| ||| |||||||||    
T  28249559 tctctcttttgctttgatttttgtgtcactacttaaatttctttgtataatttagttgtccaa 28249497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 48892676 - 48892630
Alignment:
Q  64 agatgtggaaagagttgcagattaagatggataaattatctaagacc 110  Q
    ||||||||||| ||||||||| |||||||||| || |||||||||||    
T  48892676 agatgtggaaaaagttgcagactaagatggatgaactatctaagacc 48892630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 37352192 - 37352257
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||||||| || |||| ||||||||||| | | |||| || |||||||| ||||||||||||||||    
T  37352192 tctctctactgttttgatttttgtgtcactacctaaatttatttgtataatttggttgtccaacaa 37352257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 1284480 - 1284524
Alignment:
Q  184 attatgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    |||||||||||| |||||||||| ||||||  |||||||||||||    
T  1284480 attatgtttttactttctctctattgctttaatttttgtgtcaat 1284524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 22605430 - 22605466
Alignment:
Q  190 tttttattttctctctagtgctttggtttttgtgtca 226  Q
    ||||||||||||||||| || ||||||||||||||||    
T  22605430 tttttattttctctctattgttttggtttttgtgtca 22605466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 27568077 - 27568128
Alignment:
Q  179 ctcatattatgttttta--ttttctctctagtgctttggtttttgtgtcaat 228  Q
    |||||||||||||||||  || |||||||| || ||||||||||||||||||    
T  27568077 ctcatattatgtttttactttctctctctattgttttggtttttgtgtcaat 27568128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 31711926 - 31711858
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    |||||||| || ||||||||||||| |||  || | | |||||| |||||||||||||||| |||||||    
T  31711926 tctctctattgttttggtttttgtgccaagactcacatttctttctatattttggttgtcccacaaatt 31711858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 38259128 - 38259172
Alignment:
Q  184 attatgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    |||||||||||| |||||||||| || |||| |||||||||||||    
T  38259128 attatgtttttactttctctctattgttttgatttttgtgtcaat 38259172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 43807790 - 43807734
Alignment:
Q  211 tttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    |||| ||||||||||| | ||||||  |||||||||| ||||||||| |||||||||    
T  43807790 tttgatttttgtgtcactacttaaatgtctttgtataatttggttgtacaacaaatt 43807734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 44649333 - 44649289
Alignment:
Q  184 attatgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    |||||||||||| |||||||||  | |||||||||||||||||||    
T  44649333 attatgtttttactttctctcttttactttggtttttgtgtcaat 44649289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 48062116 - 48062167
Alignment:
Q  179 ctcatattatgttttta--ttttctctctagtgctttggtttttgtgtcaat 228  Q
    |||||||||||||||||  || |||||||| || ||||||||||||||||||    
T  48062116 ctcatattatgtttttactttctctctctattgttttggtttttgtgtcaat 48062167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 44674039 - 44674089
Alignment:
Q  64 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 114  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||    
T  44674039 agatgtggcaagagttgcagattgagatggataaattacctaagacctgat 44674089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 48346908 - 48346976
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    |||||||| |||||||||||||||||||||  | | | |||||||||||||| |||||||| |||||||    
T  48346908 tctctctattgctttggtttttgtgtcaatattcatatttctttgtatatttaggttgtcccacaaatt 48346976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 34626755 - 34626700
Alignment:
Q  64 agatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaa 119  Q
    ||||||||||||||||| ||||| |||||||| || ||||| ||||||||||||||    
T  34626755 agatgtggaaagagttgtagattgagatggatcaactatctgagacctgatttgaa 34626700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 4494222 - 4494161
Alignment:
Q  203 tctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||| ||||||| ||||||||||| | | |||| ||||||||||| ||||||||||||||||    
T  4494222 tctattgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaa 4494161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 32587807 - 32587758
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    |||| |||||||||||| |||||||||| |||||||||||||||| ||||    
T  32587807 ctcacattatgtttttaatttctctctattgctttggtttttgtgccaat 32587758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 35299880 - 35299835
Alignment:
Q  183 tattatgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||    
T  35299880 tattatatttttattttctctctattgctttgatttttgtgtcaat 35299835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 1340191 - 1340111
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtcc 259  Q
    |||| ||| |||||| |||||||||||| ||||||| ||||||||||||    || | |||||| ||||||||||||||||    
T  1340191 ctcacattgtgttttcattttctctctattgctttgatttttgtgtcaagatctacatttctttatatattttggttgtcc 1340111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 10811217 - 10811277
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtcc 259  Q
    |||||||| ||||||||| ||||||||||| || | | |||||||||||||| ||||||||    
T  10811217 tctctctattgctttggtatttgtgtcaatactcatatttctttgtatatttaggttgtcc 10811277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 27089973 - 27089902
Alignment:
Q  188 tgtttttattttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtcc 259  Q
    |||||||| ||| |||||| ||||||||||||||| ||||| || | | |||||||||||||| | ||||||    
T  27089973 tgtttttactttttctctattgctttggtttttgtatcaatactcatatttctttgtatatttagattgtcc 27089902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 465
Target Start/End: Complemental strand, 34626488 - 34626445
Alignment:
Q  422 ccaggaagaacggataatgaggtgaaaaacttttggaattcaag 465  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||    
T  34626488 ccaggtagaacggataatgagattaaaaacttttggaattcaag 34626445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 13735188 - 13735237
Alignment:
Q  179 ctcatattatgtttttattttct--ctctagtgctttggtttttgtgtca 226  Q
    |||||||||| ||||||||||||  ||||| |||||||||||||||||||    
T  13735188 ctcatattatctttttattttctttctctattgctttggtttttgtgtca 13735237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 34307526 - 34307468
Alignment:
Q  203 tctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaa 261  Q
    |||| ||||||||||||||| ||| | | |||| ||||||||||| |||||||||||||    
T  34307526 tctattgctttggtttttgtatcactacctaaatttctttgtataatttggttgtccaa 34307468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 44413932 - 44413883
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    |||| ||||| ||||||  ||||||||| |||||||||||||||||||||    
T  44413932 ctcacattatctttttaccttctctctattgctttggtttttgtgtcaat 44413883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 228
Target Start/End: Complemental strand, 55151707 - 55151678
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaat 228  Q
    ||||||||||||||||||||||||||||||    
T  55151707 tctctctagtgctttggtttttgtgtcaat 55151678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 8502880 - 8502824
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggtt 255  Q
    |||||||| ||||||| ||||| | ||||| | |||| |||||||||||||||||||    
T  8502880 tctctctattgctttgatttttatctcaatacataaatttctttgtatattttggtt 8502824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 9753278 - 9753365
Alignment:
Q  179 ctcatattatgtttttattttctct--ctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||| ||| ||||||||||||||||  ||| || |||||||||||||||||  || | |  ||||||||||||| |||||||| ||||    
T  9753278 ctcacattgtgtttttattttctctatctattgttttggtttttgtgtcaacactcatatatctttgtatatttaggttgtcccacaa 9753365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 39714026 - 39713958
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    |||||||| ||||||| ||||||||| | |   |||| || |||||||| |||||||||||||||||||    
T  39714026 tctctctattgctttgatttttgtgttactatctaaaattttttgtataatttggttgtccaacaaatt 39713958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 50876374 - 50876323
Alignment:
Q  179 ctcatattatgtttttattttctc--tctagtgctttggtttttgtgtcaat 228  Q
    ||||||||||||||||||||||||  |||| ||||||| ||||||| |||||    
T  50876374 ctcatattatgtttttattttctctttctattgctttgatttttgtatcaat 50876323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 54260193 - 54260125
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    |||||||| ||||||| |||||||| |||  || | | |||||| |||||||||||||||| |||||||    
T  54260193 tctctctattgctttgatttttgtgccaaaactcacatttctttttatattttggttgtcccacaaatt 54260125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 21418335 - 21418279
Alignment:
Q  211 tttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    |||||||||||||||||| |||| | ||||||||||||||||||| ||||| |||||    
T  21418335 tttggtttttgtgtcaatccttacatttctttgtatattttggttatccaataaatt 21418279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 21468020 - 21467964
Alignment:
Q  211 tttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    ||||||||||| |||||| |||| | ||||||||||||||||||||||||| |||||    
T  21468020 tttggtttttgagtcaatccttacatttctttgtatattttggttgtccaataaatt 21467964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 2242033 - 2241955
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgta-tattttggttgtc 258  Q
    |||| |||| ||||||||||||||| |  ||||||||||||||||||||||| | |  ||||||||| |||||||||||||    
T  2242033 ctcacattaagtttttattttctctat--tgctttggtttttgtgtcaatgcctcattttctttgtattattttggttgtc 2241955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 34850696 - 34850770
Alignment:
Q  179 ctcatattatgtttttattttct--ctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatatttt 251  Q
    ||||||||||||||||| ||| |  |||| ||||| |||||||||||||||| || | | |||||||||||||||    
T  34850696 ctcatattatgtttttactttatatctctggtgctctggtttttgtgtcaatactcatatttctttgtatatttt 34850770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 3772416 - 3772497
Alignment:
Q  180 tcatattatgttttta--ttttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtcc 259  Q
    ||||||||| ||||||  |||||| |||| || |||| ||||||||||| |   |||| |||||||||||||||||||||||    
T  3772416 tcatattatctttttaccttttctttctattgatttgatttttgtgtcactatctaaatttctttgtatattttggttgtcc 3772497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 14910258 - 14910320
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaa 261  Q
    |||||||| ||||||| ||||||||||| | | |||| ||||||||||| ||| |||||||||    
T  14910258 tctctctattgctttgatttttgtgtcactacctaaatttctttgtataatttagttgtccaa 14910320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 26595408 - 26595459
Alignment:
Q  179 ctcatattatgtttttattttctctct--agtgctttggtttttgtgtcaat 228  Q
    |||| |||||||||||| |||||||||  | |||||||||||||||||||||    
T  26595408 ctcacattatgtttttactttctctctctattgctttggtttttgtgtcaat 26595459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 47990328 - 47990254
Alignment:
Q  190 tttttattttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||||||||||||| || |  |||| ||||||||||||| || | | ||||||||||||||||||||||| ||||    
T  47990328 tttttattttctctttattattttgatttttgtgtcaatactcatatttctttgtatattttggttgtcccacaa 47990254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 45008137 - 45008085
Alignment:
Q  215 gtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    |||||||| ||||| |||| | |||||||||||||||| ||||||||||||||    
T  45008137 gtttttgtatcaatccttacatttctttgtatattttgattgtccaacaaatt 45008085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 16127461 - 16127411
Alignment:
Q  64 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 114  Q
    ||||||||||||||||| ||||| |||||||| |||||| ||||| |||||    
T  16127461 agatgtggaaagagttgtagattgagatggattaattatttaagaactgat 16127411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 611613 - 611560
Alignment:
Q  211 tttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||||||||||||||||| || | | |||||||||||||||| |||||| ||||    
T  611613 tttggtttttgtgtcaatactcatatttctttgtatattttgattgtcccacaa 611560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 19442571 - 19442655
Alignment:
Q  179 ctcatattatgtttttattttctctct--agtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaa 261  Q
    |||| |||||||||| |||||||||||  | |||||||||||||||| |||  | || |  |||||||||||||| |||||||||    
T  19442571 ctcacattatgttttcattttctctctctattgctttggtttttgtgccaagacctatatatctttgtatattttagttgtccaa 19442655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 37962871 - 37962924
Alignment:
Q  67 tgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaa 120  Q
    ||||| ||||||||||| |||||||||||||||||  | || ||||||||||||    
T  37962871 tgtgggaagagttgcaggttaagatggataaattacttgaggcctgatttgaaa 37962924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 4857992 - 4858060
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    |||||||| ||||||| | |||||| || | |||||| ||||||||||| | ||||||||||| |||||    
T  4857992 tctctctattgctttgatatttgtgccactacttaaatttctttgtataatgtggttgtccaataaatt 4858060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 8350197 - 8350161
Alignment:
Q  190 tttttattttctctctagtgctttggtttttgtgtca 226  Q
    |||||| |||||||||| |||||||||||||||||||    
T  8350197 tttttactttctctctattgctttggtttttgtgtca 8350161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 9566972 - 9566921
Alignment:
Q  179 ctcatattatgtttttattttctc--tctagtgctttggtttttgtgtcaat 228  Q
    |||| |||||||||||| ||||||  |||| |||||||||||||||||||||    
T  9566972 ctcacattatgtttttactttctcactctattgctttggtttttgtgtcaat 9566921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 29359698 - 29359742
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtg 223  Q
    |||| ||||| |||||| |||||||||| ||||||||||||||||    
T  29359698 ctcacattatctttttactttctctctattgctttggtttttgtg 29359742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 40439829 - 40439761
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    |||||||| ||||||| | |||||| || | | |||| ||||||||||| | |||||||||||||||||    
T  40439829 tctctctattgctttgatatttgtgacactacctaaatttctttgtataatgtggttgtccaacaaatt 40439761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 3564599 - 3564648
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    ||||||||||||||||| |||||||||| || |||||||||| |||||||    
T  3564599 ctcatattatgtttttactttctctctattgatttggtttttttgtcaat 3564648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 6596392 - 6596437
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgt 224  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||    
T  6596392 ctcacattatgtttttactttctctctattgctttggtttttgtgt 6596437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 20478459 - 20478512
Alignment:
Q  208 tgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaa 261  Q
    ||||||||||||||||||| |  ||| | |||||||||||||||||||||||||    
T  20478459 tgctttggtttttgtgtcagtcattacatttctttgtatattttggttgtccaa 20478512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 36563042 - 36562977
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||||||| ||||| ||||||||||||||| | | || |||||||| || ||||||||||||||||    
T  36563042 tctctctattgcttaggtttttgtgtcaataccttaatttctttgtgtagtttggttgtccaacaa 36562977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 9168176 - 9168132
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtg 223  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||||    
T  9168176 ctcacattatatttttattttctctctattgctttggtttttgtg 9168132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 29463055 - 29463142
Alignment:
Q  179 ctcatattatgtttttattttctctct--agtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||| ||| ||||||||||||||||||  | ||||||| |||||||| |||| || | | |||||||||||||| |||||||| ||||    
T  29463055 ctcacattttgtttttattttctctctctattgctttgatttttgtgccaatactcatatttctttgtatatttaggttgtcccacaa 29463142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 39195826 - 39195894
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaaatt 267  Q
    |||||||| ||||||| ||||||| ||| | | |||| ||||||||||| | |||||||||||||||||    
T  39195826 tctctctattgctttgatttttgtatcactacctaaatttctttgtataatgtggttgtccaacaaatt 39195894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 14011395 - 14011454
Alignment:
Q  197 tttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttg 256  Q
    |||||||||| || ||||||||||||||||||  ||| | || |||||||||||||||||    
T  14011395 tttctctctattgttttggtttttgtgtcaatctttatatttttttgtatattttggttg 14011454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 1281333 - 1281383
Alignment:
Q  64 agatgtggaaagagttgcagattaagatggataaattatctaagacctgat 114  Q
    ||||||||||||||||| || |||||||||| ||||||| |||| ||||||    
T  1281333 agatgtggaaagagttgtaggttaagatggacaaattatttaagtcctgat 1281383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 13375676 - 13375630
Alignment:
Q  182 atattatgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    ||||||| ||||||||||||||||| || ||| ||||||||||||||    
T  13375676 atattatatttttattttctctctattgttttagtttttgtgtcaat 13375630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 54774 - 54839
Alignment:
Q  191 ttttattttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttg 256  Q
    ||||| |||||||| |  |||||| ||||||||||||| ||   ||||||||||||||||||||||    
T  54774 ttttactttctctccaacgctttgatttttgtgtcaatactcgtacttctttgtatattttggttg 54839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 7552977 - 7552928
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    |||| |||||||||||| |||||||||| ||| ||| |||||||||||||    
T  7552977 ctcacattatgtttttactttctctctactgcattgatttttgtgtcaat 7552928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 8920160 - 8920225
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaacaa 264  Q
    |||||||| |||||||||||||||| |||  || | | |||||| |||||||||||||||| ||||    
T  8920160 tctctctattgctttggtttttgtgccaagactcacatttctttctatattttggttgtcccacaa 8920225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 31683506 - 31683434
Alignment:
Q  180 tcatattatgtttttattttctctct--agtgctttggtttttgtgtcaatgcttaaacttctttgtatattt 250  Q
    |||||||||||||||| ||||||| |  | || |||||||||||||||||| || | | ||||||||||||||    
T  31683506 tcatattatgtttttactttctctttttattgttttggtttttgtgtcaatactcatatttctttgtatattt 31683434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 19844315 - 19844271
Alignment:
Q  184 attatgtttttattttctctctagtgctttggtttttgtgtcaat 228  Q
    |||||||||||| |||||||||| ||||||||||| |||| ||||    
T  19844315 attatgtttttactttctctctattgctttggtttgtgtgccaat 19844271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 8921 - 8981
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtcc 259  Q
    |||||||| |||| || ||||||||||||| || | | |||||||||||||||||||||||    
T  8921 tctctctattgctatgatttttgtgtcaatactcatatttctttgtatattttggttgtcc 8981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 8942 - 8880
Alignment:
Q  199 tctctctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaa 261  Q
    |||||||| ||||||| ||||||||||| | | |||| ||||||||||| | |||||||||||    
T  8942 tctctctattgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtccaa 8880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 22839 - 22781
Alignment:
Q  203 tctagtgctttggtttttgtgtcaatgcttaaacttctttgtatattttggttgtccaa 261  Q
    |||| |||||||||||||||||||||   || | ||||||||||| |||||||||||||    
T  22839 tctattgctttggtttttgtgtcaatcgatacatttctttgtatactttggttgtccaa 22781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 90019 - 90085
Alignment:
Q  179 ctcatattatgtttttattttctctctagtgctttggtttttgtgtcaatgcttaaacttctttgta 245  Q
    ||||||| ||||||||| ||| |||||| | ||||||||||| ||||||| |||||  |||||||||    
T  90019 ctcatatcatgtttttactttttctctattcctttggtttttatgtcaatacttaattttctttgta 90085  T

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Target: scaffold0662 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 1219 - 1255
Alignment:
Q  192 tttattttctctctagtgctttggtttttgtgtcaat 228  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  1219 tttattttctctctattgctttggtttttgtgccaat 1255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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