View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0593_low_13 (Length: 495)

Name: NF0593_low_13
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0593_low_13
NF0593_low_13
[»] chr8 (11 HSPs)
chr8 (8-204)||(5920880-5921076)
chr8 (272-453)||(5921143-5921324)
chr8 (280-453)||(5949043-5949216)
chr8 (280-453)||(5960308-5960481)
chr8 (280-453)||(5984571-5984744)
chr8 (281-450)||(5887180-5887349)
chr8 (281-443)||(5843041-5843203)
chr8 (281-443)||(5849783-5849945)
chr8 (366-419)||(41351226-41351279)
chr8 (343-417)||(39916636-39916710)
chr8 (18-51)||(16677138-16677171)
[»] chr2 (2 HSPs)
chr2 (289-422)||(42788930-42789063)
chr2 (386-422)||(27172818-27172854)
[»] chr3 (2 HSPs)
chr3 (361-421)||(34626700-34626760)
chr3 (366-417)||(44674038-44674089)
[»] chr7 (1 HSPs)
chr7 (361-426)||(45676080-45676145)
[»] chr4 (2 HSPs)
chr4 (364-419)||(43560551-43560606)
chr4 (379-421)||(24359829-24359871)
[»] chr1 (4 HSPs)
chr1 (366-417)||(16127411-16127462)
chr1 (361-421)||(51044466-51044526)
chr1 (366-417)||(16138921-16138972)
chr1 (360-426)||(37962858-37962924)
[»] chr5 (3 HSPs)
chr5 (366-416)||(1281333-1281383)
chr5 (366-416)||(1319335-1319385)
chr5 (366-419)||(2590843-2590896)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 5920880 - 5921076
Alignment:
Q  8 agattattctggtaaagtactggtgtttcctagcattgagtgaaatatttttaattttgataatgacaaatgtctataagatttcagctatgggttaaga 107  Q
    |||||||  |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5920880 agattatattggtaaagtactggtgtttcctagcattgagtgaaacattttgaattttgataatgacaaatgtctataagatttcagctatgggttaaga 5920979  T
Q  108 acttgatcatatagctttaagagacggagtttaaattctctaaacagttgcgaaataatcaataatgtcacttaattaatattaatttctattctcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5920980 acttgatcatatagctttaagagacggagtttaaattctctaaacagttgctaaataatcaataatgtcacttaattaatattaatttctattctcc 5921076  T

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Target: chr8; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 272 - 453
Target Start/End: Original strand, 5921143 - 5921324
Alignment:
Q  272 taatagctatgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcagg 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5921143 taatagctatgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcagg 5921242  T
Q  372 tcttagataatttatccatcttaatctacaactctttccacatctttgcagacctacacacatcatgatatataaatgaaaa 453  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  5921243 tcttagataatttatccatcttaatctgcaactctttccacatctctgcagacctacacacatcatgatatacaaatgaaaa 5921324  T

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Target: chr8; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 280 - 453
Target Start/End: Original strand, 5949043 - 5949216
Alignment:
Q  280 atgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagat 379  Q
    |||||||||||||||||||||||||||||| |||| ||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  5949043 atgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagat 5949142  T
Q  380 aatttatccatcttaatctacaactctttccacatctttgcagacctacacacatcatgatatataaatgaaaa 453  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  5949143 aatttatccatcttaatcttcaactctttccacatctctgcagacctacacatatcatgatatacaaatgaaaa 5949216  T

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Target: chr8; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 280 - 453
Target Start/End: Original strand, 5960308 - 5960481
Alignment:
Q  280 atgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagat 379  Q
    ||||||||||||||||||||||||| |||| |||||||||||| |||||||||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  5960308 atgtaatgaatatacctattgcctaaaatgttgtggagttctacaatgagtgctacttcttgttgagagaaacttccacgtttcaaatcaggtcttagat 5960407  T
Q  380 aatttatccatcttaatctacaactctttccacatctttgcagacctacacacatcatgatatataaatgaaaa 453  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||    
T  5960408 aatttatccatcttaatctacaactctttccacatctctccagacctacacacatcatgatatacaaatgaaaa 5960481  T

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Target: chr8; HSP #5
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 280 - 453
Target Start/End: Original strand, 5984571 - 5984744
Alignment:
Q  280 atgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagat 379  Q
    |||||||||||||||||||||||||||||| |||| ||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  5984571 atgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagat 5984670  T
Q  380 aatttatccatcttaatctacaactctttccacatctttgcagacctacacacatcatgatatataaatgaaaa 453  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  5984671 aatttatccatcttaatctgcaactctttccacatctctgcagacctacacatatcatgatatacaaatgaaaa 5984744  T

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Target: chr8; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 281 - 450
Target Start/End: Original strand, 5887180 - 5887349
Alignment:
Q  281 tgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 380  Q
    ||||||| ||||||||||||||||||||| |||| ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  5887180 tgtaatggatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 5887279  T
Q  381 atttatccatcttaatctacaactctttccacatctttgcagacctacacacatcatgatatataaatga 450  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  5887280 atttatccatcttaatctgcaactctttccgcatctctgcagacctacacacatcatgatatataaatga 5887349  T

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Target: chr8; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 281 - 443
Target Start/End: Original strand, 5843041 - 5843203
Alignment:
Q  281 tgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 380  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||| |||  |||||| || |||||||||||||||||| |||||||||||||||||    
T  5843041 tgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgttttaaatcaggtcttagata 5843140  T
Q  381 atttatccatcttaatctacaactctttccacatctttgcagacctacacacatcatgatata 443  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||    
T  5843141 atttatccatcttaatctacaactttttccacatctctgcagacctagacacatcatgatata 5843203  T

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Target: chr8; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 281 - 443
Target Start/End: Original strand, 5849783 - 5849945
Alignment:
Q  281 tgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 380  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||| |||  |||||| || ||||||||||||||||||||||||||||||||||||    
T  5849783 tgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttagata 5849882  T
Q  381 atttatccatcttaatctacaactctttccacatctttgcagacctacacacatcatgatata 443  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||| ||| |||||||||||    
T  5849883 atttatccatcttaatctacaactttttccacatctctgcagacctagacatatcatgatata 5849945  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 41351226 - 41351279
Alignment:
Q  366 atcaggtcttagataatttatccatcttaatctacaactctttccacatctttg 419  Q
    ||||||||| | |||||||||||||||||||| ||||||||| ||||| |||||    
T  41351226 atcaggtctcaaataatttatccatcttaatcgacaactcttaccacacctttg 41351279  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 417
Target Start/End: Complemental strand, 39916710 - 39916636
Alignment:
Q  343 tgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctt 417  Q
    |||| |||| ||||||| || | ||||||||| |||||||| |||||||| ||||| || || ||||||||||||    
T  39916710 tgagtgaaatttccacgcttaagatcaggtctgagataattgatccatctcaatctgcagctttttccacatctt 39916636  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 16677138 - 16677171
Alignment:
Q  18 ggtaaagtactggtgtttcctagcattgagtgaa 51  Q
    |||||| |||||||||||||||||||||||||||    
T  16677138 ggtaaattactggtgtttcctagcattgagtgaa 16677171  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 422
Target Start/End: Original strand, 42788930 - 42789063
Alignment:
Q  289 atatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatcc 388  Q
    |||||||| || ||||||||| | || ||||| | ||| || |||||||||||  |||| |||||||||||||||||||||||||||| |||||||||||    
T  42788930 atatacctgtttcctagaatggtatgaagttcaataataagagcagcttcttgtggagaaaaacttccacgtttcaaatcaggtcttaaataatttatcc 42789029  T
Q  389 atcttaatctacaactctttccacatctttgcag 422  Q
    |||| || || ||||| ||||||||||| |||||    
T  42789030 atctcaacctgcaactttttccacatctctgcag 42789063  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 422
Target Start/End: Original strand, 27172818 - 27172854
Alignment:
Q  386 tccatcttaatctacaactctttccacatctttgcag 422  Q
    ||||||||||||| |||||||||||||||||||||||    
T  27172818 tccatcttaatctgcaactctttccacatctttgcag 27172854  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 421
Target Start/End: Original strand, 34626700 - 34626760
Alignment:
Q  361 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctttgca 421  Q
    |||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||    
T  34626700 ttcaaatcaggtctcagatagttgatccatctcaatctacaactctttccacatctttgca 34626760  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 44674089 - 44674038
Alignment:
Q  366 atcaggtcttagataatttatccatcttaatctacaactctttccacatctt 417  Q
    |||||||||||| |||||||||||||| ||||| |||||||| |||||||||    
T  44674089 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatctt 44674038  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 426
Target Start/End: Original strand, 45676080 - 45676145
Alignment:
Q  361 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctttgcagacct 426  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||| || |||| ||||    
T  45676080 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgcaaacct 45676145  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 419
Target Start/End: Original strand, 43560551 - 43560606
Alignment:
Q  364 aaatcaggtcttagataatttatccatcttaatctacaactctttccacatctttg 419  Q
    |||||||| || | ||| ||||||||||| ||||||||||||||||||||||||||    
T  43560551 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttg 43560606  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 421
Target Start/End: Original strand, 24359829 - 24359871
Alignment:
Q  379 taatttatccatcttaatctacaactctttccacatctttgca 421  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||    
T  24359829 taattgatccatcttaacctacaactttttccacatctttgca 24359871  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 16127411 - 16127462
Alignment:
Q  366 atcaggtcttagataatttatccatcttaatctacaactctttccacatctt 417  Q
    ||||| ||||| |||||| |||||||| ||||||||||||||||||||||||    
T  16127411 atcagttcttaaataattaatccatctcaatctacaactctttccacatctt 16127462  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 421
Target Start/End: Complemental strand, 51044526 - 51044466
Alignment:
Q  361 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctttgca 421  Q
    ||||||||||| || | ||| ||||||||||| |||||||| ||||||||||| |||||||    
T  51044526 ttcaaatcaggcctcaaatagtttatccatctcaatctacagctctttccacacctttgca 51044466  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 16138921 - 16138972
Alignment:
Q  366 atcaggtcttagataatttatccatcttaatctacaactctttccacatctt 417  Q
    ||||||| ||| ||| || |||||||| ||||||||||||||||||||||||    
T  16138921 atcaggttttaaatagttaatccatctcaatctacaactctttccacatctt 16138972  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 426
Target Start/End: Complemental strand, 37962924 - 37962858
Alignment:
Q  360 tttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctttgcagacct 426  Q
    |||||||||||| || |  ||||||||||||||||| || |||||||| ||||| ||||||| ||||    
T  37962924 tttcaaatcaggcctcaagtaatttatccatcttaacctgcaactcttcccacacctttgcaaacct 37962858  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 416
Target Start/End: Complemental strand, 1281383 - 1281333
Alignment:
Q  366 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 416  Q
    |||||| |||| ||||||| |||||||||| ||||||||||||||||||||    
T  1281383 atcaggacttaaataatttgtccatcttaacctacaactctttccacatct 1281333  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 416
Target Start/End: Original strand, 1319335 - 1319385
Alignment:
Q  366 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 416  Q
    |||||| |||||||||||  ||||||| | |||||||||||||||||||||    
T  1319335 atcaggccttagataattattccatctaagtctacaactctttccacatct 1319385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 2590896 - 2590843
Alignment:
Q  366 atcaggtcttagataatttatccatcttaatctacaactctttccacatctttg 419  Q
    |||||| |||| ||||||||||||||| || ||||||||||| ||||| |||||    
T  2590896 atcaggccttaaataatttatccatctcaacctacaactcttaccacacctttg 2590843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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