View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_16 (Length: 459)
Name: NF0593_low_16
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 417
Target Start/End: Complemental strand, 21880279 - 21879894
Alignment:
| Q |
12 |
ataggcgcgtgaaatgataataaagtggaaaacaaatggagtaatattttctagggtgaagagggtaattctaggaccggagtccaacaatagccaaagt |
111 |
Q |
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| T |
21880279 |
ataggcgcgtgaaatgataatagagtggaaaagaaatggagtaatattttctagggtcaagagggtaattctaggatcggagtccaacaatagcccaagt |
21880180 |
T |
|
| Q |
112 |
ctgtagaagcgcctttgtgagatacgacgtcgtggaagagcgaagcgttttccagaagcaaatagggaacattcattgttccgaaaaaatcaacacgaaa |
211 |
Q |
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| T |
21880179 |
ctgtagaagcgcctttgtgagatacgacgtcgtggaagagcgaagcgttttccagaagcaaatagggaacattcattgttccgaaaaaatcaacacgaaa |
21880080 |
T |
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| Q |
212 |
cgatgattagcattctcacacaggtaatttcaatttacgattctctttcagtgttttgtttcaattgatgatgatttgtgaattttgatttgttgaaatg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21880079 |
cgatgattagcattctcacacaggtaatttcaatttacgattctctttcag--------------------tgatttgtgaattttgatttgttgaaatg |
21880000 |
T |
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| Q |
312 |
gtttcaggagcggttattgggagcttcattgggtgtgatattgacgagtgccgttgtttgggatcaacgtagatacatctatggttctatttccgattct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21879999 |
gtttcaggagcggttattgggagcttcattgggtgtgatattgacgagtgccgttgtttgggatcaacgtagatacatctatggttctatttccgattct |
21879900 |
T |
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