View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0593_low_17 (Length: 455)

Name: NF0593_low_17
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0593_low_17
NF0593_low_17
[»] chr4 (2 HSPs)
chr4 (95-455)||(41680668-41681047)
chr4 (95-135)||(24403818-24403858)
[»] chr8 (2 HSPs)
chr8 (211-301)||(24323001-24323091)
chr8 (212-297)||(4701024-4701109)
[»] chr7 (2 HSPs)
chr7 (211-301)||(19279953-19280043)
chr7 (98-135)||(19279841-19279878)
[»] chr5 (1 HSPs)
chr5 (211-301)||(6820794-6820884)
[»] chr3 (4 HSPs)
chr3 (211-333)||(6251837-6251958)
chr3 (214-301)||(53379031-53379118)
chr3 (211-301)||(6172525-6172615)
chr3 (214-262)||(1673634-1673682)
[»] chr1 (3 HSPs)
chr1 (211-301)||(19036813-19036903)
chr1 (98-135)||(19036701-19036738)
chr1 (98-134)||(7793723-7793759)
[»] chr2 (2 HSPs)
chr2 (211-385)||(9683977-9684153)
chr2 (98-135)||(9684229-9684266)
[»] chr6 (1 HSPs)
chr6 (98-133)||(10404750-10404785)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 95 - 455
Target Start/End: Original strand, 41680668 - 41681047
Alignment:
Q  95 cacgaaggtcaaaagatctcagtcttacaaatattcaattccatgtctggtaatagggacaacttccgaatgatgtcaagtgttttagactcatcatttg 194  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| || ||||||||||||||||||||| ||    
T  41680668 cacgaaggtcaaaagatctcagtcctacaaatattcaattccatgtctagtaatagggacaacttccaaatggtgccaagtgttttagactcatcatctg 41680767  T
Q  195 aatcccccaatgataatcccatcatcaagataccaagcatgaaggaaaaacttgcaattgtatttgatttaattaataagaaggtgtaacacaagagcaa 294  Q
    |||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  41680768 aatccccctatgataatcccatcatcaagataccaagtatgaagaaaaaacttgcaattgtatttaatttaattaataagaatgtgtaacacaagagcaa 41680867  T
Q  295 aaaggagagtccccttcgagtcaccttgctgcactccagtgtctaacataatgtccatccctaaggtataacctcgctgcctaaccataaat-------- 386  Q
    ||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||            
T  41680868 aaaggagagtccccttcaagtcaacttgctgcactccagtgacttacataatgtccatccgtaaggtataacctcgctgcctaaccataaataaattgaa 41680967  T
Q  387 -----------atagatgggcatcctaccctcactttgcacaatagtgttgacttgtctatacactgaacatagccaaaa 455  Q
               ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  41680968 accacaaaaaaatagatgggcatcctaccctcactttgcagaacagtgttgacttgtctatacactgaacatagccaaaa 41681047  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 24403818 - 24403858
Alignment:
Q  95 cacgaaggtcaaaagatctcagtcttacaaatattcaattc 135  Q
    |||||| |||||||||| ||||||||||| |||||||||||    
T  24403818 cacgaatgtcaaaagatttcagtcttacagatattcaattc 24403858  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 24323001 - 24323091
Alignment:
Q  211 tcccatcatcaagataccaagcatgaaggaaaaacttgcaattgtatttgatttaattaataagaaggtgtaacacaagagcaaaaaggag 301  Q
    |||||||||||||||||||||||||||| | || ||||||| | | |||||| |  | ||||||| |||| |||| |||||||||||||||    
T  24323001 tcccatcatcaagataccaagcatgaagaagaagcttgcaactatctttgatatgctgaataagagggtgcaacataagagcaaaaaggag 24323091  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 4701024 - 4701109
Alignment:
Q  212 cccatcatcaagataccaagcatgaaggaaaaacttgcaattgtatttgatttaattaataagaaggtgtaacacaagagcaaaaa 297  Q
    ||||||||||||||||||| ||| ||| |||| ||||||||| | | |||| | |  || |||| |||||||||||||| ||||||    
T  4701024 cccatcatcaagataccaaacataaagaaaaagcttgcaattatctctgatctgaggaacaagagggtgtaacacaagaccaaaaa 4701109  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 19279953 - 19280043
Alignment:
Q  211 tcccatcatcaagataccaagcatgaaggaaaaacttgcaattgtatttgatttaattaataagaaggtgtaacacaagagcaaaaaggag 301  Q
    ||||||||||||| |||||||||||||| | || ||||||| | | | |||| | || ||||||| |||| ||||||||||||||||||||    
T  19279953 tcccatcatcaaggtaccaagcatgaagaagaagcttgcaactatctctgatatgatgaataagagggtgcaacacaagagcaaaaaggag 19280043  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 19279841 - 19279878
Alignment:
Q  98 gaaggtcaaaagatctcagtcttacaaatattcaattc 135  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  19279841 gaaggccaaaagatctcagtcttacgaatattcaattc 19279878  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 211 - 301
Target Start/End: Complemental strand, 6820884 - 6820794
Alignment:
Q  211 tcccatcatcaagataccaagcatgaaggaaaaacttgcaattgtatttgatttaattaataagaaggtgtaacacaagagcaaaaaggag 301  Q
    |||||||||||||||||||||||||||  | || ||||||| | | ||||| || || ||||||| ||||||||| ||||| |||||||||    
T  6820884 tcccatcatcaagataccaagcatgaaaaagaagcttgcaactatctttgaattgatgaataagagggtgtaacaaaagagaaaaaaggag 6820794  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 211 - 333
Target Start/End: Complemental strand, 6251958 - 6251837
Alignment:
Q  211 tcccatcatcaagataccaagcatgaaggaaaaacttgcaattgtatttgatttaattaataagaaggtgtaacacaagagcaaaaaggagagtcccctt 310  Q
    |||||||||||||||||||| ||||||| | || ||||||| | | | | || | || ||||||| ||||||||| ||||||||||||||| || ||||     
T  6251958 tcccatcatcaagataccaaacatgaagaagaagcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggagcgt-cccta 6251860  T
Q  311 cgagtcaccttgctgcactccag 333  Q
     | ||||||||| ||||||||||    
T  6251859 tgggtcaccttgttgcactccag 6251837  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 53379031 - 53379118
Alignment:
Q  214 catcatcaagataccaagcatgaaggaaaaacttgcaattgtatttgatttaattaataagaaggtgtaacacaagagcaaaaaggag 301  Q
    ||||||||||||||||||||||||| | || ||||||| | | | |||| | || ||||||| |||| |||||| |||||||||||||    
T  53379031 catcatcaagataccaagcatgaagaagaagcttgcaactatctctgatatgatgaataagagggtgcaacacacgagcaaaaaggag 53379118  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 301
Target Start/End: Complemental strand, 6172615 - 6172525
Alignment:
Q  211 tcccatcatcaagataccaagcatgaaggaaaaacttgcaattgtatttgatttaattaataagaaggtgtaacacaagagcaaaaaggag 301  Q
    |||||||||||||||||||| ||||||| | || ||||||| | | | | || | || ||||||| ||||||||| |||||||||||||||    
T  6172615 tcccatcatcaagataccaaacatgaagaagaatcttgcaactatttctaatctgatgaataagagggtgtaacataagagcaaaaaggag 6172525  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 1673634 - 1673682
Alignment:
Q  214 catcatcaagataccaagcatgaaggaaaaacttgcaattgtatttgat 262  Q
    ||||||||||||||||||||| ||| | |||||||||| ||||| ||||    
T  1673634 catcatcaagataccaagcattaagaagaaacttgcaactgtatatgat 1673682  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 19036813 - 19036903
Alignment:
Q  211 tcccatcatcaagataccaagcatgaaggaaaaacttgcaattgtatttgatttaattaataagaaggtgtaacacaagagcaaaaaggag 301  Q
    ||||||||||||| |||||||||||||| | || ||||||| | | | |||| | || ||||||| |||| ||||||||||||||||||||    
T  19036813 tcccatcatcaaggtaccaagcatgaagaataagcttgcaactatctctgatatgatgaataagagggtgcaacacaagagcaaaaaggag 19036903  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 19036701 - 19036738
Alignment:
Q  98 gaaggtcaaaagatctcagtcttacaaatattcaattc 135  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  19036701 gaaggccaaaagatctcagtcttacaaatattcaattc 19036738  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 7793759 - 7793723
Alignment:
Q  98 gaaggtcaaaagatctcagtcttacaaatattcaatt 134  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  7793759 gaaggccaaaagatctcagtcttacgaatattcaatt 7793723  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 385
Target Start/End: Complemental strand, 9684153 - 9683977
Alignment:
Q  211 tcccatcatcaagataccaagcatgaaggaaaaacttgcaattgtatttgatttaattaataagaaggtgtaacacaagagcaaaaaggagagtcccctt 310  Q
    ||||||||||||| |||||||||||||| | ||  |||||| | | | |||| | || ||||||| |||| |||||||||||||||||||| | |||       
T  9684153 tcccatcatcaaggtaccaagcatgaagaagaagtttgcaactatctctgatctgatgaataagagggtgcaacacaagagcaaaaaggagcggccctaa 9684054  T
Q  311 cgagtcaccttgctgcactccagtgtctaacata--atgtccatccctaaggtataacctcgctgcctaaccataaa 385  Q
    || ||| ||||| |||||||||||  |  |||||  ||||||||| | ||||||||| |||| |||||  |||||||    
T  9684053 cgggtcgccttgttgcactccagtagcagacataatatgtccatcaccaaggtataatctcgttgcctgtccataaa 9683977  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 9684266 - 9684229
Alignment:
Q  98 gaaggtcaaaagatctcagtcttacaaatattcaattc 135  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  9684266 gaaggccaaaagatttcagtcttacaaatattcaattc 9684229  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 10404750 - 10404785
Alignment:
Q  98 gaaggtcaaaagatctcagtcttacaaatattcaat 133  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10404750 gaaggtcaaaagatctcagtcttacgaatattcaat 10404785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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