View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0593_low_2 (Length: 674)

Name: NF0593_low_2
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0593_low_2
NF0593_low_2
[»] chr3 (1 HSPs)
chr3 (1-598)||(9681177-9681774)
[»] chr1 (1 HSPs)
chr1 (74-123)||(3523389-3523438)


Alignment Details
Target: chr3 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 598
Target Start/End: Complemental strand, 9681774 - 9681177
Alignment:
Q  1 tgcaacctgttttgttcgatgaagcacagacgataataatttgataataatttgaaaccaggaggctggcccatagacaccgataataatttgataaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9681774 tgcaacctgttttgttcgatgaagcacagacgataataatttgataataatttgaaaccaggaggctggcccatagacaccgataataatttgataaaac 9681675  T
Q  101 taaagtgattgaaagtaccacatatgttagacgtcagtgtattgttagtgtctggcaaggatatgttcctgacactgtaaattccttcaaattggagggt 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9681674 taaagtgattgaaagtaccacatatgtcagacgtcagtgtattgttagtgtctggcaaggatatgttcctgacactgtaaattccttcaaattggagggt 9681575  T
Q  201 tggtgctctacacattgttgttaaatagtagctatagtggcgatacacattgttattgaatcgacattgaaaccaggcgtgtagnnnnnnnagagttgcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||       |||||||||    
T  9681574 tggtgctctacacattgttgttaaatagtagctatagtggcgatacacattgttattgaattgacattgaaaccaggagtgtagtttttttagagttgcc 9681475  T
Q  301 aataaaaatatcatttcaaactgagaatcaggataataaacataatacactaattatatgatattnnnnnnnnnnnnnnnnnntagaagtggatgaagtt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||                  |||||||||||||||||    
T  9681474 aataaaaatatcatttcaaactgagaatcaggataataaacataatacactaattagatgatattaaaattaaaataaaaaaatagaagtggatgaagtt 9681375  T
Q  401 tgcaatcctagagcaaataaaaggtgaattcataagttgcttttatcgattccactagaaattgatggggctgctgagctgagttcagaactatagccac 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9681374 tgcaatcctagagcaaataaaaggtgaattcataagttgcttttatcgattccactagaaattgatggggctgctgagctgagttcagaactatagccac 9681275  T
Q  501 tgattattgtttttcacccaacgggtatcgtcgcggtcatatccgttattgcggttgttgtctccactgcttgttgcggtttccagttgccgtctctg 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9681274 tgattattgtttttcacccaacgggtatcgtcgcggtcatatccgttattgcggttgttgtctccactgcttgttacggtttccagttgccgtctctg 9681177  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 3523389 - 3523438
Alignment:
Q  74 tagacaccgataataatttgataaaactaaagtgattgaaagtaccacat 123  Q
    ||||||||||||||||||||||||||   ||||||||||| ||| |||||    
T  3523389 tagacaccgataataatttgataaaatagaagtgattgaatgtaacacat 3523438  T

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