View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_22 (Length: 412)
Name: NF0593_low_22
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 30 - 399
Target Start/End: Original strand, 29142356 - 29142725
Alignment:
| Q |
30 |
catacatgcactcacaatttccatatatttagttatttatttgtcatcacagaaaattgaaggtaaatttattgtcaatacaaaaggaaacattttcact |
129 |
Q |
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| T |
29142356 |
catacatgcactcacaatttccatatatttagttatttatttgtcatcacagaaaattgaaggtaactttattgtcaatacaaaaggaaacattttcact |
29142455 |
T |
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| Q |
130 |
gaggcagtagaaggtgtgttgatcacttcatggcttttggaggcactctaacagctgaaacaaataatgtaatcacaagtttcatcagttttctttttca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29142456 |
gaggcagtagaaggtgtgttgatcacttcatggcttttggaggcactctaacagctgaaacaaataatgtaatcacaagtttcatcagttttctttttca |
29142555 |
T |
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| Q |
230 |
aaatatttcttattcattactaactatgaaacatatataagaaacgtgtgtgcgcgcgcgcgtaaatgaatagatagaagatcttataatgtaacc--nn |
327 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29142556 |
aaatatttcttattcattactaactatgaaacatataaaagaaacgtgtgt--gtgcgcgcgtaaatgaagagatagaagatcttataatgtaaccaaaa |
29142653 |
T |
|
| Q |
328 |
nnnnnngatggaagatcttacatccacattgcattcctgctggaactttcaatccacaagaccttgcaacag |
399 |
Q |
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| T |
29142654 |
aaaaaagatggaagatcttacatccacattgcattcctgctggaactttcaatccgcaagaccttgcaacag |
29142725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 29569350 - 29569293
Alignment:
| Q |
342 |
atcttacatccacattgcattcctgctggaactttcaatccacaagaccttgcaacag |
399 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
29569350 |
atcttacatccacattgcattcctgctggaagcttcactccacaagaccttgcaacag |
29569293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 29569486 - 29569394
Alignment:
| Q |
147 |
gttgatcacttcat--ggcttttggaggcactctaacagctgaaacaaataatgtaatcacaagtttcatcagttttctttttcaaaatattt |
237 |
Q |
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|||||||||||||| |||||| || || | ||||| |||||||||||| ||||| ||||||||||| |||||||||||| ||||||||||| |
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| T |
29569486 |
gttgatcacttcatatggctttcggtgggattctaatagctgaaacaaacaatgtcatcacaagttttgtcagttttctttctcaaaatattt |
29569394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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