View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0593_low_35 (Length: 353)

Name: NF0593_low_35
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0593_low_35
NF0593_low_35
[»] chr6 (6 HSPs)
chr6 (25-306)||(3585249-3585530)
chr6 (25-306)||(3572404-3572685)
chr6 (40-306)||(3575688-3575954)
chr6 (25-274)||(3563741-3563990)
chr6 (25-274)||(3569389-3569638)
chr6 (40-215)||(13275728-13275903)
[»] chr4 (1 HSPs)
chr4 (25-223)||(38356807-38357005)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 25 - 306
Target Start/End: Original strand, 3585249 - 3585530
Alignment:
Q  25 catcctaaggcacccaacatagcccatctactgtggatgacctcgagttcatggtttttggcaaatgtctctgggtcggcagaaagcccaacattgtccc 124  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | ||||    
T  3585249 catcctaaggcacccaacatagcccatctactatgaatgacctcgagttcacggtttttggcaaatgtctctgggtcggcagaaagcccagcagtatccc 3585348  T
Q  125 gaccataatcaccgggaatttctctcgtgaggtaagatggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcg 224  Q
     |||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  3585349 aaccataatcaccaggaaattctcccgtgaggtaagatggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccactggcttcc 3585448  T
Q  225 agaaggaacattcttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaaagcttg 306  Q
    ||||||| || |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||    
T  3585449 agaaggagcagtcttcttggtggttgttttcctcatggtgattcttcccatcacaaggtctggagtcgaaggggaaagcttg 3585530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 25 - 306
Target Start/End: Complemental strand, 3572685 - 3572404
Alignment:
Q  25 catcctaaggcacccaacatagcccatctactgtggatgacctcgagttcatggtttttggcaaatgtctctgggtcggcagaaagcccaacattgtccc 124  Q
    ||||| ||||| |||||||||||||| |||||||| |||||||| |||||| ||||||| |  || ||||| || || |||||||| ||| || ||||||    
T  3572685 catcccaaggctcccaacatagcccacctactgtgaatgacctctagttcacggtttttagagaaggtctccggatcagcagaaagtccagcagtgtccc 3572586  T
Q  125 gaccataatcaccgggaatttctctcgtgaggtaagatggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcg 224  Q
      ||||| |||||||||| ||| |  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  3572585 atccatagtcaccgggaaattcaccagtaaggtaagatggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccatgggcttcc 3572486  T
Q  225 agaaggaacattcttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaaagcttg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3572485 agaaggaacattcttcttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaaagcttg 3572404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 40 - 306
Target Start/End: Complemental strand, 3575954 - 3575688
Alignment:
Q  40 aacatagcccatctactgtggatgacctcgagttcatggtttttggcaaatgtctctgggtcggcagaaagcccaacattgtcccgaccataatcaccgg 139  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| || |||||| |||||| ||||| |    
T  3575954 aacatagcccatctactgtggatgacctcgagttcacggttcttggcaaatgtctctgggtcagcagaaagcccagcagtgtcccaaccatagtcaccag 3575855  T
Q  140 gaatttctctcgtgaggtaagatggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcgagaaggaacattctt 239  Q
    ||| ||| |  ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| || |||||    
T  3575854 gaaattcaccagtgagataagatggagcttcaccagagaatggacccaagtatttgacacgatctggaccgtaccacgggcttccagaagggacgttctt 3575755  T
Q  240 cttggtggttgttttcctcatggtaattcttcccatgacaaggtctggagtagagggggaaagcttg 306  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||    
T  3575754 cttgttggttgttttcctcatggtgattcttcccatcacaaggtctggagtggaaggggaaagcttg 3575688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 25 - 274
Target Start/End: Complemental strand, 3563990 - 3563741
Alignment:
Q  25 catcctaaggcacccaacatagcccatctactgtggatgacctcgagttcatggtttttggcaaatgtctctgggtcggcagaaagcccaacattgtccc 124  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| || ||||||    
T  3563990 catcccaaggcacccaacatagcccatctactgtggatgacctcgagttcacggtttttggcaaatgtctctgggtcagcagaaagtccagcagtgtccc 3563891  T
Q  125 gaccataatcaccgggaatttctctcgtgaggtaagatggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcg 224  Q
     ||| || ||||| |||| ||| |  |||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||     
T  3563890 aaccgtagtcaccaggaaattcaccggtgaggtaggatggggcttcaccggagaatgggcccaagtacttgacacggtctggaccgtaccaaggacttcc 3563791  T
Q  225 agaaggaacattcttcttggtggttgttttcctcatggtaattcttccca 274  Q
    ||||||||||  |||||||||||||| ||||||||| || | ||||||||    
T  3563790 agaaggaacagacttcttggtggttgctttcctcattgtgactcttccca 3563741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 25 - 274
Target Start/End: Complemental strand, 3569638 - 3569389
Alignment:
Q  25 catcctaaggcacccaacatagcccatctactgtggatgacctcgagttcatggtttttggcaaatgtctctgggtcggcagaaagcccaacattgtccc 124  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| ||| || ||||||    
T  3569638 catcccaaggcacccaacatagcccatctactgtggatgacctcgagttcacggttcttggcaaatgtctctgggtcagcagaaagtccagcagtgtccc 3569539  T
Q  125 gaccataatcaccgggaatttctctcgtgaggtaagatggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttcg 224  Q
     ||| || ||||| || | ||| |  |||||||| ||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||     
T  3569538 aaccgtagtcaccagggaattcacctgtgaggtaggatggggcttcaccggagaatgggcccaagtacttcacacggtctggaccgtaccatgggcttcc 3569439  T
Q  225 agaaggaacattcttcttggtggttgttttcctcatggtaattcttccca 274  Q
    ||| |||||   |||||||||||||||||||||||| || | ||||||||    
T  3569438 agacggaacggacttcttggtggttgttttcctcattgtgactcttccca 3569389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 13275903 - 13275728
Alignment:
Q  40 aacatagcccatctactgtggatgacctcgagttcatggtttttggcaaatgtctctgggtcggcagaaagcccaacattgtcccgaccataatcaccgg 139  Q
    ||||| |||||||||  |||||| ||||| |||||| ||||||| |||||||||||||| || |||||||| ||| || | | || |||||||||||| |    
T  13275903 aacatggcccatctagagtggataacctcaagttcacggttttttgcaaatgtctctggatcagcagaaagtccagcagtattccaaccataatcaccag 13275804  T
Q  140 gaatttctctcgtgaggtaagatggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtacca 215  Q
    | | ||| |  || | ||||||||| || |||||| ||||||| |||| ||||||||||||||||||||| |||||    
T  13275803 ggaattcaccagtcaagtaagatggggcctcaccaaagaatgggcccaggtacttgacacggtctggaccatacca 13275728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 38357005 - 38356807
Alignment:
Q  25 catcctaaggcacccaacatagcccatctactgtggatgacctcgagttcatggtttttggcaaatgtctctgggtcggcagaaagcccaacattgtccc 124  Q
    ||||| ||||| |||||||||||||| ||||| |||||||| || |||||| |||| ||||| |||||||||||||| |||||||| ||| || ||||||    
T  38357005 catcccaaggctcccaacatagcccacctactatggatgacttcaagttcacggttcttggcgaatgtctctgggtcagcagaaagtccagcagtgtccc 38356906  T
Q  125 gaccataatcaccgggaatttctctcgtgaggtaagatggagcttcaccagagaatggacccaagtacttgacacggtctggaccgtaccacgggcttc 223  Q
      || || ||||| || |  ||||  || | |||||| || |  |||||||||||||| || |||||||| ||||||||||| |||||||| |||||||    
T  38356905 atccgtagtcacctgggaactctccagtcaagtaagacgggggctcaccagagaatgggcctaagtacttaacacggtctgggccgtaccatgggcttc 38356807  T

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