View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_38 (Length: 341)
Name: NF0593_low_38
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_38 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 102 - 341
Target Start/End: Original strand, 30718138 - 30718377
Alignment:
| Q |
102 |
gagagtgaagaagatgaatataatcttcgaggcagatcttctcgttctttgctggtcgcttcttcgtggagattgcgtgtggtaccattgccattcccgt |
201 |
Q |
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| T |
30718138 |
gagagtgaagaagatgaatgtaatcttcgaggcagatcttctcgttctttgctggtcgcttcttcgtggagattgcgtgtggtaccattgccattcccgt |
30718237 |
T |
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| Q |
202 |
tgagaattcttctgccattgaaatttcaaatttcaattcaaactgaaaatgaaagagggaaatgggaacttttatacctctcctcgcgcgctttttcacg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30718238 |
tgagaattcttctgccattgaaatttcaaatttcaattcaaactgaaaatgaaagagggaaatgggaacttttatacccctcctcgcgcgctttttcacg |
30718337 |
T |
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| Q |
302 |
agtttgttcctagtctattatcacttcttctagatatttc |
341 |
Q |
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| T |
30718338 |
agtttgttactagtctattagcacttcttctagatctttc |
30718377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 102 - 341
Target Start/End: Complemental strand, 30894171 - 30893931
Alignment:
| Q |
102 |
gagagtgaagaagatgaatataatcttcgaggcagatcttctcgttctttgctggtcgcttcttcgtggagattgcgtgtggtaccattgccattcccgt |
201 |
Q |
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||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30894171 |
gagagtgaagaagatgaatgtaatcttcgaggcagagcttttcgttctttgctgaacgcttcttcgaggagattgcgtgtggtaccattgccattcccgt |
30894072 |
T |
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| Q |
202 |
tgagaattcttctgccattgaaatttcaaatttcaatt-caaactgaaaatg-aaagagggaaatgggaacttttatacctctcctcgcgcgctttttca |
299 |
Q |
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|||||||||||| |||||||||||||||| |||||||| ||||||||||||| || ||||||| | || ||||||||| | |||||||||||||||| |
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| T |
30894071 |
tgagaattcttcagccattgaaatttcaa-tttcaatttcaaactgaaaatgtaaggagggaagggtcaagttttatacccgtactcgcgcgctttttca |
30893973 |
T |
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| Q |
300 |
cgagtttgttcctagtctattatcacttcttctagatatttc |
341 |
Q |
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|||||||||| || |||| ||| || ||||||||||| |||| |
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| T |
30893972 |
cgagtttgttactcgtctgttaccatttcttctagatctttc |
30893931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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