View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0593_low_39 (Length: 341)
Name: NF0593_low_39
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 290
Target Start/End: Complemental strand, 10007611 - 10007353
Alignment:
| Q |
30 |
aggctcactctggatggatttttggtggaatagctgagcttgttgataattcgagtgatgccaaagcaactaagtaggtttatgnnnnnnnnnncctgcc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10007611 |
aggctcactctggatggatttttggtggaatagctgagcttgttgataattcgagtgatgccaaagcaactaagtaggtttatgttttttttt--ctgcc |
10007514 |
T |
|
| Q |
130 |
actgttgtcatgtttttgtccttgttaccaaacttgctatcaataatgtgtatttttctaacatctagaatttttcttggtaaggcttttggtttgaggt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10007513 |
actgttgtcatgtttttgtccttgttaccaaacttgctatcaataatgtgtatttttctaacatctagaatttttcttggtaaggcttttggtttgaggt |
10007414 |
T |
|
| Q |
230 |
taaaagttttaaggagtattaataaatttatcaatcttcgcatcttggagttggttctgtg |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10007413 |
taaaagttttaaggagtattaataaatttatcaatcttcgcatcttggagttggttctgtg |
10007353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 28761609 - 28761551
Alignment:
| Q |
32 |
gctcactctggatggatttttggtggaatagctgagcttgttgataattcgagtgatgc |
90 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || |||||||||||||| || ||||| |
|
|
| T |
28761609 |
gctcactctggatggatttttggtggattagccgaacttgttgataattcaagggatgc |
28761551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2877 times since January 2019
Visitors: 3829