View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_40 (Length: 340)
Name: NF0593_low_40
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 30 - 325
Target Start/End: Complemental strand, 9212454 - 9212159
Alignment:
| Q |
30 |
gcatgtagtggttgttgacgcacccatgtcatctcagcttgtcttggtacaaagttggaaaagaaaactataggagctcctcttttcaaaacgttccttg |
129 |
Q |
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| T |
9212454 |
gcatgtagtggttgttgacgcacccatgtcatctcagcttgtcttggtacaaagttggaaaagaaaactacaggagctcctcttttcaaaacgttccttg |
9212355 |
T |
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| Q |
130 |
ggttttcattgataatatggaagtataactctcctgaattttctggtaaatcattttcaaccgagagtaaaagtattttttctggtggaggttcagtggg |
229 |
Q |
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| T |
9212354 |
gtttttcattgataatatggaagtataactctcctgaattttctggtaaatcattttcaaccgagagtaaaagtattttttctggtggaggttcagtggg |
9212255 |
T |
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| Q |
230 |
gagtgaaatagaggctctactaccaaaagttgaattattgaaacacataataatcacaagtagtagcaagaaggatacatggtttgaagtggacat |
325 |
Q |
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| T |
9212254 |
gagtgaaatagaggctctactaccaaaagttgaattattgaaacacataataatcacaagtagtagcaacaaagatacatggtttgaagtggacat |
9212159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 29252803 - 29252875
Alignment:
| Q |
245 |
tctactaccaaaagttgaattattgaaacacataataatcacaagtagtagcaagaaggatacatggtttgaa |
317 |
Q |
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| T |
29252803 |
tctactgccaaaggttgaattactgaaacacatagcaatcacaagtagtaacaagaaggatacatggattgaa |
29252875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 9892970 - 9893025
Alignment:
| Q |
236 |
aatagaggctctactaccaaaagttgaattattgaaacacataataatcacaagta |
291 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
9892970 |
aatagagactctactaccaaaagttgaattattgaaagacataacaatcacaagta |
9893025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 311
Target Start/End: Original strand, 7250351 - 7250431
Alignment:
| Q |
231 |
agtgaaatagaggctctactaccaaaagttgaattattgaaacacataataatcacaagtagtagcaagaaggatacatgg |
311 |
Q |
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|||| ||||||| |||| || ||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||| |
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| T |
7250351 |
agtggaatagagactctgctgccaaaagttaaattattgaaacacatagcaatcaaaagtagtaaaaagaaggatacatgg |
7250431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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