View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_41 (Length: 340)
Name: NF0593_low_41
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 289
Target Start/End: Complemental strand, 10007611 - 10007353
Alignment:
| Q |
30 |
aggctcactctggatggatttttggtggaatagctgagcttgttgataattcgagtgatgccaaagcaactaagtaggtttatgnnnnnnnnncctgcca |
129 |
Q |
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| T |
10007611 |
aggctcactctggatggatttttggtggaatagctgagcttgttgataattcgagtgatgccaaagcaactaagtaggtttatgtttttttttc-tgcca |
10007513 |
T |
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| Q |
130 |
ctgttgtcatgtttttgtccttgttaccaaacttgctatcaataatgtgtatttttctaacatctagaatttttcttggtaaggcttttggtttgaggtt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10007512 |
ctgttgtcatgtttttgtccttgttaccaaacttgctatcaataatgtgtatttttctaacatctagaatttttcttggtaaggcttttggtttgaggtt |
10007413 |
T |
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| Q |
230 |
aaaagttttaaggagtattaataaatttatcaatcttcgcatcttggagttggttctgtg |
289 |
Q |
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| T |
10007412 |
aaaagttttaaggagtattaataaatttatcaatcttcgcatcttggagttggttctgtg |
10007353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 28761609 - 28761551
Alignment:
| Q |
32 |
gctcactctggatggatttttggtggaatagctgagcttgttgataattcgagtgatgc |
90 |
Q |
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||||||||||||||||||||||||||| |||| || |||||||||||||| || ||||| |
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| T |
28761609 |
gctcactctggatggatttttggtggattagccgaacttgttgataattcaagggatgc |
28761551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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