View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_42 (Length: 340)
Name: NF0593_low_42
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_42 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 32 - 340
Target Start/End: Complemental strand, 42212553 - 42212253
Alignment:
| Q |
32 |
cggagctcatcatcagccaccctttgctgctcaatatcattacgtgttagcttaaccaataaagctttgatagcagttctgtcacaatctgaaagactgg |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212553 |
cggagctcatcatcagccaccctttgctgctcaatatcattacgtgttagcttaaccaataaagctttgatagcagttctgtcacaatctgaaagactgg |
42212454 |
T |
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| Q |
132 |
atccagannnnnnngttctgtaactcccttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttagg |
231 |
Q |
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| T |
42212453 |
atccagatttttttgttctgtaactcccttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttag- |
42212355 |
T |
|
| Q |
232 |
agtaactgagtaagggatgtttgcaaaagtgtctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttcatatg |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212354 |
-------gagtaagggatgtttgcaaaagtgtctgctgtgttttagggcaggttctgtgaccagcatcatgccatttttgaatgcaggatctttcatatg |
42212262 |
T |
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| Q |
332 |
tctgcaaaa |
340 |
Q |
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||||||||| |
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| T |
42212261 |
tctgcaaaa |
42212253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 32 - 340
Target Start/End: Complemental strand, 42203685 - 42203385
Alignment:
| Q |
32 |
cggagctcatcatcagccaccctttgctgctcaatatcattacgtgttagcttaaccaataaagctttgatagcagttctgtcacaatctgaaagactgg |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42203685 |
cggagctcatcatcagccaccctttgctgctcaatatcattacgtgttagcttaaccaataaagctttgatagcagttctgtcacaatctgaaagactgg |
42203586 |
T |
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| Q |
132 |
atccagannnnnnngttctgtaactcccttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttagg |
231 |
Q |
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| T |
42203585 |
atccagatttttttgttctgtaactcccttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttag- |
42203487 |
T |
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| Q |
232 |
agtaactgagtaagggatgtttgcaaaagtgtctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttcatatg |
331 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42203486 |
-------gagtaagggatgtatgcaaaagtgtctgctgtgttttagggcaggttctgtgaccagcatcaagccatttttgaatgcaggatctttcatatg |
42203394 |
T |
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| Q |
332 |
tctgcaaaa |
340 |
Q |
| |
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||||||||| |
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| T |
42203393 |
tctgcaaaa |
42203385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 32 - 340
Target Start/End: Original strand, 42420694 - 42420994
Alignment:
| Q |
32 |
cggagctcatcatcagccaccctttgctgctcaatatcattacgtgttagcttaaccaataaagctttgatagcagttctgtcacaatctgaaagactgg |
131 |
Q |
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||||||||| || ||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42420694 |
cggagctcaccagcagccgccctttgctgttcaatatcattacttgttagcttatccaataaagctttgatagcagttttgtcacaatctgaaagactgg |
42420793 |
T |
|
| Q |
132 |
atccagannnnnnngttctgtaactcccttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttagg |
231 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42420794 |
ttccagatttctttgttctgcaactcccttgcttctttggtagttcaacaccattgctatcacaccataaaccaatcagactcttcaaaacgtagttag- |
42420892 |
T |
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| Q |
232 |
agtaactgagtaagggatgtttgcaaaagtgtctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttcatatg |
331 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42420893 |
-------gagtaagggttgtttgcaaaagtgtctgctgtgttttagggcaggttctgtgaccagcatcatgccatttttgaatgcaggatctttcatatg |
42420985 |
T |
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| Q |
332 |
tctgcaaaa |
340 |
Q |
| |
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||||||||| |
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| T |
42420986 |
tctgcaaaa |
42420994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 242 - 340
Target Start/End: Complemental strand, 42218332 - 42218234
Alignment:
| Q |
242 |
taagggatgtttgcaaaagtgtctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttcatatgtctgcaaaa |
340 |
Q |
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|||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
42218332 |
taagggatgtatgcaaaagtgtctactgtattttagggcaggttatgtgaccagcatcaagtcatttttgaatgcaggatctttcatatgtctgcaaaa |
42218234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 338
Target Start/End: Original strand, 42408871 - 42409172
Alignment:
| Q |
32 |
cggagctcatcatcagccaccctttgctgctcaatatcattacgtgttagcttaaccaataaagctttgatagcagttctgtcacaatctgaaagactgg |
131 |
Q |
| |
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||||||||| || |||| || ||||||| |||||| |||||| |||| ||||| ||||||| ||||||||||| |||||||| |||||||||||| ||| |
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| T |
42408871 |
cggagctcaccagcagcgcccatttgctgttcaataccattacttgtttgcttatccaataatgctttgatagcggttctgtcgcaatctgaaagattgg |
42408970 |
T |
|
| Q |
132 |
atccagannnnnnngttctgtaactcccttgctt---ctttggtagttcaacaccattgctat-cacaccataaaccaatcagactcttcaaaacgtagt |
227 |
Q |
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||||| ||||| | |||||||||| ||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||| | || |
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| T |
42408971 |
tcccagatttctttgttctacagttcccttgctttttctttgttagttaaacaccattgctgttcacaccataaaccaatcagactcttcaaaacatggt |
42409070 |
T |
|
| Q |
228 |
taggagtaactgagtaagggatgtttgcaaaagtgtctgctgtgttttagggcaggttatgtgaccagcatcatgccatttttgaatgcaggatctttca |
327 |
Q |
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||| ||||||||| ||| | | ||||| ||||||||||||| | ||| ||| |||||||||||||| ||||||||||||| ||||||||| |
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| T |
42409071 |
tag--------gagtaagggctgtat-ccaaagtatctgctgtgttttcgcgcaagttctgtgaccagcatcaaataatttttgaatgcaagatctttca |
42409161 |
T |
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| Q |
328 |
tatgtctgcaa |
338 |
Q |
| |
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|||||| |||| |
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| T |
42409162 |
tatgtccgcaa |
42409172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 42218406 - 42218340
Alignment:
| Q |
45 |
cagccaccctttgctgctcaatatcattacgtgttagcttaaccaataaagctttgatagcagttct |
111 |
Q |
| |
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||||| |||||| || ||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
42218406 |
cagccgcccttttttgttcaatatcattacttgttagcttatccaataaagctttgatagcagttct |
42218340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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