View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0593_low_47 (Length: 322)
Name: NF0593_low_47
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_47 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 7608395 - 7608092
Alignment:
| Q |
13 |
aatatgtgatatgttttaccttaagaggatggctggttgctttgcataacacttcatttgcagttccagaattcaatttcaaaaatatcttctctttctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7608395 |
aatatgtgatatgttttaccttaagaggatggctggttgctttgcataacacttcatttgcagttccagaattcaatttcaaaaatatcttctctttctt |
7608296 |
T |
|
| Q |
113 |
agaaattgatcttccaacagggttgacatatttaggaaagcagaaagggatgttaagacagaactcgccatcgtgaaataatattttctgggaccatctg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7608295 |
agaaattgatcttccaacagggttgacatatttaggaaagcagaaagggatgttaagacagaactcgccatcgtgaaataatattttctgggaccatctg |
7608196 |
T |
|
| Q |
213 |
atcttaactgagaagatggagcctcccttaaactgcaagacagaatgaagttttaaatatacatgatgtacatgttaataactatccattatgaagggag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7608195 |
atcttaactgagaagatggagcctcccttaaactgcaagacagaatgaagttttaaatatacatgatgtacatgttaataactatccattatgaagggag |
7608096 |
T |
|
| Q |
313 |
atta |
316 |
Q |
| |
|
|||| |
|
|
| T |
7608095 |
atta |
7608092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1214 times since January 2019
Visitors: 3841