View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0593_low_49 (Length: 317)
Name: NF0593_low_49
Description: NF0593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0593_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 95 - 286
Target Start/End: Original strand, 5492385 - 5492576
Alignment:
| Q |
95 |
aacacaaaatctatttatatgtaaagtgtagatgaatgcaccataaataccccaatttgtatgttttaccaaaattagaaaatgtgatttgaaagttttg |
194 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5492385 |
aacacaaaatctatgcatatgtaaagtgtagatgaatgcaccataaataccccaatttgtatgctttaccaaaattagaaaatgtgatttgaaagttttg |
5492484 |
T |
|
| Q |
195 |
ttatctatcatgcaagtaagtataaactcccaaaaagggaaaagaatgaagtaacaacttaccatccaaaagagcttcagaaacttcatctc |
286 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5492485 |
ttatctatcatgcaaataagtataaactcccaaagagggaaaagaatgaagtaacaacttaccatccaaaagagcttcagaaacttcatctc |
5492576 |
T |
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